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    FOXA1 forkhead box A1 [ Desmodus rotundus (common vampire bat) ]

    Gene ID: 123478729, updated on 3-Dec-2024

    Summary

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    Gene symbol
    FOXA1
    Gene description
    forkhead box A1
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Desmodus rotundus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yangochiroptera; Phyllostomidae; Desmodontinae; Desmodus
    Orthologs
    human mouse all
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    Genomic context

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    See FOXA1 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2023_02 current HLdesRot8A (GCF_022682495.1) 7 NC_071393.1 (50053435..50109348)
    101 previous assembly ASM294091v2 (GCF_002940915.1) Unplaced Scaffold NW_020090542.1 (4005921..4016968)

    Chromosome 7 - NC_071393.1Genomic Context describing neighboring genes Neighboring gene tetratricopeptide repeat domain 6 Neighboring gene U2 spliceosomal RNA Neighboring gene vacuolar protein sorting-associated protein 72 homolog Neighboring gene uncharacterized LOC112296511 Neighboring gene ferritin light chain-like Neighboring gene mirror-image polydactyly 1 Neighboring gene 40S ribosomal protein S8-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein domain specific binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transcription factor binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in anatomical structure morphogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cell differentiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    hepatocyte nuclear factor 3-alpha
    Names
    Putative forkhead/hnf-3-related transcription factor

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_022682495.1-RS_2023_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference HLdesRot8A Primary Assembly

    Genomic

    1. NC_071393.1 Reference HLdesRot8A Primary Assembly

      Range
      50053435..50109348
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_053927695.1 → XP_053783670.1  hepatocyte nuclear factor 3-alpha isoform X1

      UniProtKB/TrEMBL
      K9IKD8

    2. XM_053927698.1 → XP_053783673.1  hepatocyte nuclear factor 3-alpha isoform X4

      UniProtKB/TrEMBL
      K9IKD8

    3. XM_053927696.1 → XP_053783671.1  hepatocyte nuclear factor 3-alpha isoform X2

      UniProtKB/TrEMBL
      K9IKD8

    4. XM_053927697.1 → XP_053783672.1  hepatocyte nuclear factor 3-alpha isoform X3

      UniProtKB/TrEMBL
      K9IKD8, K9IXZ8
    Nucleotide Protein
    Heading Accession and Version

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