U.S. flag

An official website of the United States government

Links from Nucleotide

    • Showing Current items.

    Plagl1 PLAG1 like zinc finger 1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 25157, updated on 9-Dec-2024

    Summary

    Official Symbol
    Plagl1provided by RGD
    Official Full Name
    PLAG1 like zinc finger 1provided by RGD
    Primary source
    RGD:3014
    See related
    EnsemblRapid:ENSRNOG00000025587 AllianceGenome:RGD:3014
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Lot1; Zac1
    Summary
    Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to act upstream of or within positive regulation of transcription by RNA polymerase II and skeletal muscle cell differentiation. Predicted to be located in Golgi apparatus and nuclear body. Orthologous to human PLAGL1 (PLAG1 like zinc finger 1). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Adrenal (RPKM 93.1), Kidney (RPKM 43.1) and 7 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Plagl1 in Genome Data Viewer
    Location:
    1p13
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (9297066..9337394)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (7477295..7517229)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (7219587..7270169)

    Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene splicing factor 3b, subunit 5 Neighboring gene ferritin light chain 1, pseudogene 4 Neighboring gene uncharacterized LOC134484946 Neighboring gene keratin-associated protein 5-1-like Neighboring gene zinc finger, C2HC-type containing 1B

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    General gene information

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    located_in Golgi apparatus  
    located_in Golgi apparatus  
    located_in intracellular membrane-bounded organelle  
    located_in nuclear body  
    located_in nuclear body  

    General protein information

    Preferred Names
    zinc finger protein PLAGL1
    Names
    Lost on transformation 1
    pleiomorphic adenoma gene-like 1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_012760.4 → NP_036892.1  zinc finger protein PLAGL1

      See identical proteins and their annotated locations for NP_036892.1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000001
      UniProtKB/TrEMBL
      P70616
      Conserved Domains (2) summary
      sd00017
      Location:6 → 26
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:49 → 73
      zf-H2C2_2; Zinc-finger double domain

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086019.1 Reference GRCr8

      Range
      9297066..9337394
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063281345.1 → XP_063137415.1  zinc finger protein PLAGL1 isoform X1

      UniProtKB/TrEMBL
      P70616
    2. XM_063281356.1 → XP_063137426.1  zinc finger protein PLAGL1 isoform X1

      UniProtKB/TrEMBL
      P70616
    3. XM_063281350.1 → XP_063137420.1  zinc finger protein PLAGL1 isoform X1

      UniProtKB/TrEMBL
      P70616
    4. XM_063281358.1 → XP_063137428.1  zinc finger protein PLAGL1 isoform X1

      UniProtKB/TrEMBL
      P70616
    5. XM_063281361.1 → XP_063137431.1  zinc finger protein PLAGL1 isoform X1

      UniProtKB/TrEMBL
      P70616
    6. XM_063281365.1 → XP_063137435.1  zinc finger protein PLAGL1 isoform X1

      UniProtKB/TrEMBL
      P70616
    7. XM_063281340.1 → XP_063137410.1  zinc finger protein PLAGL1 isoform X1

      UniProtKB/TrEMBL
      P70616
    8. XM_063281341.1 → XP_063137411.1  zinc finger protein PLAGL1 isoform X1

      UniProtKB/TrEMBL
      P70616
      Related
      ENSRNOP00000030918.2, ENSRNOT00000030329.5
    External link. Please review our privacy policy.