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    Lypd4 Ly6/Plaur domain containing 4 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 681194, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Lypd4provided by RGD
    Official Full Name
    Ly6/Plaur domain containing 4provided by RGD
    Primary source
    RGD:1583497
    See related
    EnsemblRapid:ENSRNOG00000020098 AllianceGenome:RGD:1583497
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    rCG53718
    Summary
    Predicted to be active in plasma membrane raft. Orthologous to human LYPD4 (LY6/PLAUR domain containing 4). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Restricted expression toward (RPKM 624.0) See more
    Orthologs
    human mouse all
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    Genomic context

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    See Lypd4 in Genome Data Viewer
    Location:
    1q21
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (89588368..89594287, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (80460487..80466105, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (81728552..81734286, complement)

    Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108349556 Neighboring gene CEA cell adhesion molecule 6 Neighboring gene DMRT-like family C2 Neighboring gene ribosomal protein S19 Neighboring gene CD79a molecule

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Gene and alternative splicing annotation with AIR. Florea L, et al. Genome Res, 2005 Jan. PMID 15632090, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    is_active_in plasma membrane raft IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    ly6/PLAUR domain-containing protein 4
    Names
    ly6/PLAUR domain-containing protein 4-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001110295.3 → NP_001103765.3  ly6/PLAUR domain-containing protein 4 precursor

      Status: PROVISIONAL

      Source sequence(s)
      JAXUCZ010000001
      UniProtKB/TrEMBL
      D3ZHB4
      Related
      ENSRNOP00000027225.6, ENSRNOT00000027226.7
      Conserved Domains (1) summary
      pfam00021
      Location:142 → 212
      UPAR_LY6; u-PAR/Ly-6 domain

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086019.1 Reference GRCr8

      Range
      89588368..89594287 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063273726.1 → XP_063129796.1  ly6/PLAUR domain-containing protein 4 isoform X1

      UniProtKB/TrEMBL
      D3ZHB4

    2. XM_063273735.1 → XP_063129805.1  ly6/PLAUR domain-containing protein 4 isoform X2

      UniProtKB/TrEMBL
      A6J914

    3. XM_063273722.1 → XP_063129792.1  ly6/PLAUR domain-containing protein 4 isoform X1

      UniProtKB/TrEMBL
      D3ZHB4

    4. XM_008758982.4 → XP_008757204.2  ly6/PLAUR domain-containing protein 4 isoform X1

      UniProtKB/TrEMBL
      D3ZHB4
      Conserved Domains (1) summary
      pfam00021
      Location:142 → 212
      UPAR_LY6; u-PAR/Ly-6 domain

    5. XM_017589712.3 → XP_017445201.1  ly6/PLAUR domain-containing protein 4 isoform X2

      UniProtKB/TrEMBL
      A6J914
      Conserved Domains (1) summary
      pfam00021
      Location:94 → 164
      UPAR_LY6; u-PAR/Ly-6 domain

    6. XM_063273733.1 → XP_063129803.1  ly6/PLAUR domain-containing protein 4 isoform X2

      UniProtKB/TrEMBL
      A6J914

    7. XM_039090589.2 → XP_038946517.1  ly6/PLAUR domain-containing protein 4 isoform X3

      Conserved Domains (1) summary
      pfam00021
      Location:90 → 160
      UPAR_LY6; u-PAR/Ly-6 domain

    8. XM_063273734.1 → XP_063129804.1  ly6/PLAUR domain-containing protein 4 isoform X2

      UniProtKB/TrEMBL
      A6J914

    9. XM_008758983.4 → XP_008757205.2  ly6/PLAUR domain-containing protein 4 isoform X1

      UniProtKB/TrEMBL
      D3ZHB4
      Conserved Domains (1) summary
      pfam00021
      Location:142 → 212
      UPAR_LY6; u-PAR/Ly-6 domain

    10. XM_063273738.1 → XP_063129808.1  ly6/PLAUR domain-containing protein 4 isoform X3

    11. XM_063273723.1 → XP_063129793.1  ly6/PLAUR domain-containing protein 4 isoform X1

      UniProtKB/TrEMBL
      D3ZHB4

    12. XM_063273736.1 → XP_063129806.1  ly6/PLAUR domain-containing protein 4 isoform X2

      UniProtKB/TrEMBL
      A6J914
    Nucleotide Protein Strain
    Heading Accession and Version

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