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    Dqx1 DEAQ box RNA-dependent ATPase 1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 680434, updated on 9-Dec-2024

    Summary

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    Symbol
    Dqx1provided by RGD
    Full Name
    DEAQ box RNA-dependent ATPase 1provided by RGD
    Primary source
    RGD:1591766
    See related
    EnsemblRapid:ENSRNOG00000008062 AllianceGenome:RGD:1591766
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to enable RNA binding activity and helicase activity. Predicted to be part of spliceosomal complex. Orthologous to human DQX1 (DEAQ-box RNA dependent ATPase 1). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Kidney (RPKM 64.7), Adrenal (RPKM 43.3) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Dqx1 in Genome Data Viewer
    Location:
    4q34
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 4 NC_086022.1 (117121216..117130315)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 4 NC_051339.1 (115563497..115572598)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 4 NC_005103.4 (113890201..113899355)

    Chromosome 4 - NC_086022.1Genomic Context describing neighboring genes Neighboring gene lysyl oxidase-like 3 Neighboring gene HtrA serine peptidase 2 Neighboring gene AUP1, lipid droplet regulating VLDL assembly factor Neighboring gene T-cell leukemia homeobox 2 Neighboring gene polycomb group ring finger 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables RNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables helicase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    part_of spliceosomal complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    ATP-dependent RNA helicase DQX1
    Names
    ATP-dependent RNA helicase DQX1-like
    DEAQ RNA-dependent ATPase
    DEAQ box polypeptide 1 (RNA-dependent ATPase)
    NP_001102877.1
    XP_038964267.1
    XP_038964268.1
    XP_038964269.1
    XP_038964270.1
    XP_063142746.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001109407.1 → NP_001102877.1  ATP-dependent RNA helicase DQX1

      See identical proteins and their annotated locations for NP_001102877.1

      Status: PROVISIONAL

      Source sequence(s)
      CH473957
      UniProtKB/TrEMBL
      A6IAJ5, D4A474
      Related
      ENSRNOP00000011002.5, ENSRNOT00000011002.7
      Conserved Domains (1) summary
      COG1643
      Location:15 → 672
      HrpA; HrpA-like RNA helicase [Translation, ribosomal structure and biogenesis]

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086022.1 Reference GRCr8

      Range
      117121216..117130315
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063286676.1 → XP_063142746.1  ATP-dependent RNA helicase DQX1 isoform X2

    2. XM_039108339.2 → XP_038964267.1  ATP-dependent RNA helicase DQX1 isoform X1

      Conserved Domains (2) summary
      COG1643
      Location:15 → 601
      HrpA; HrpA-like RNA helicase [Translation, ribosomal structure and biogenesis]
      pfam07717
      Location:662 → 737
      OB_NTP_bind; Oligonucleotide/oligosaccharide-binding (OB)-fold

    3. XM_039108340.2 → XP_038964268.1  ATP-dependent RNA helicase DQX1 isoform X1

      Related
      ENSRNOP00000100374.1, ENSRNOT00000123946.1
      Conserved Domains (2) summary
      COG1643
      Location:15 → 601
      HrpA; HrpA-like RNA helicase [Translation, ribosomal structure and biogenesis]
      pfam07717
      Location:662 → 737
      OB_NTP_bind; Oligonucleotide/oligosaccharide-binding (OB)-fold

    4. XM_039108341.2 → XP_038964269.1  ATP-dependent RNA helicase DQX1 isoform X3

      Conserved Domains (2) summary
      COG1643
      Location:79 → 413
      HrpA; HrpA-like RNA helicase [Translation, ribosomal structure and biogenesis]
      pfam07717
      Location:474 → 549
      OB_NTP_bind; Oligonucleotide/oligosaccharide-binding (OB)-fold

    5. XM_039108342.2 → XP_038964270.1  ATP-dependent RNA helicase DQX1 isoform X4

      Conserved Domains (2) summary
      COG1643
      Location:65 → 371
      HrpA; HrpA-like RNA helicase [Translation, ribosomal structure and biogenesis]
      pfam07717
      Location:432 → 507
      OB_NTP_bind; Oligonucleotide/oligosaccharide-binding (OB)-fold
    Nucleotide Protein Strain
    Heading Accession and Version

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