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    C5h8orf34 similar to human chromosome 8 open reading frame 34 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 500390, updated on 9-Dec-2024

    Summary

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    Official Symbol
    C5h8orf34provided by RGD
    Official Full Name
    similar to human chromosome 8 open reading frame 34provided by RGD
    Primary source
    RGD:1564053
    See related
    EnsemblRapid:ENSRNOG00000005375 AllianceGenome:RGD:1564053
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1564053
    Summary
    Orthologous to human C8orf34 (chromosome 8 open reading frame 34). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Brain (RPKM 66.1), Liver (RPKM 8.5) and 2 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See C5h8orf34 in Genome Data Viewer
    Location:
    5q11
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 5 NC_086023.1 (12021000..12560212, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 5 NC_051340.1 (7237968..7777119, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 5 NC_005104.4 (6935078..7465665, complement)

    Chromosome 5 - NC_086023.1Genomic Context describing neighboring genes Neighboring gene Y box binding protein 1, pseudogene 1 Neighboring gene small nucleolar RNA SNORA2/SNORA34 family Neighboring gene U2 spliceosomal RNA Neighboring gene phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 2 Neighboring gene uncharacterized LOC134487055

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    uncharacterized protein C8orf34 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001109259.2 → NP_001102729.2  uncharacterized protein C8orf34 homolog isoform 1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000005
      UniProtKB/TrEMBL
      D3ZPH6
      Related
      ENSRNOP00000060947.4, ENSRNOT00000066254.5

    2. NM_001195648.2 → NP_001182577.1  uncharacterized protein C8orf34 homolog isoform 2

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000005

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086023.1 Reference GRCr8

      Range
      12021000..12560212 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063288168.1 → XP_063144238.1  uncharacterized protein C8orf34 homolog isoform X7

    2. XM_017593564.3 → XP_017449053.1  uncharacterized protein C8orf34 homolog isoform X6

      Related
      ENSRNOP00000111368.1, ENSRNOT00000164316.1

    3. XM_039110519.2 → XP_038966447.1  uncharacterized protein C8orf34 homolog isoform X1

      Conserved Domains (1) summary
      pfam17824
      Location:6 → 411
      DUF5586; Family of unknown function (DUF5586)

    4. XM_017593563.3 → XP_017449052.1  uncharacterized protein C8orf34 homolog isoform X4

    5. XM_017593561.3 → XP_017449050.1  uncharacterized protein C8orf34 homolog isoform X2

      UniProtKB/TrEMBL
      A6JFE3

    6. XM_017593562.3 → XP_017449051.1  uncharacterized protein C8orf34 homolog isoform X3

      UniProtKB/TrEMBL
      A0A8I5ZLX5
      Related
      ENSRNOP00000078997.1, ENSRNOT00000096147.2

    7. XM_039110521.2 → XP_038966449.1  uncharacterized protein C8orf34 homolog isoform X9

      Conserved Domains (1) summary
      pfam17824
      Location:6 → 353
      DUF5586; Family of unknown function (DUF5586)

    8. XM_039110520.2 → XP_038966448.1  uncharacterized protein C8orf34 homolog isoform X5

      Conserved Domains (1) summary
      pfam17824
      Location:1 → 387
      DUF5586; Family of unknown function (DUF5586)

    9. XM_017593566.3 → XP_017449055.1  uncharacterized protein C8orf34 homolog isoform X8

    Nucleotide Protein Strain
    Heading Accession and Version

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