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    Atp5f1d ATP synthase F1 subunit delta [ Rattus norvegicus (Norway rat) ]

    Gene ID: 245965, updated on 9-Dec-2024

    Summary

    Official Symbol
    Atp5f1dprovided by RGD
    Official Full Name
    ATP synthase F1 subunit deltaprovided by RGD
    Primary source
    RGD:621372
    See related
    EnsemblRapid:ENSRNOG00000014625 AllianceGenome:RGD:621372
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Atp5d
    Summary
    Contributes to ATP hydrolysis activity. Involved in response to resveratrol. Located in mitochondrial inner membrane. Part of proton-transporting ATP synthase complex, catalytic core F(1). Used to study obesity. Biomarker of colitis and myocardial infarction. Human ortholog(s) of this gene implicated in mitochondrial complex V (ATP synthase) deficiency nuclear type 5. Orthologous to human ATP5F1D (ATP synthase F1 subunit delta). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Heart (RPKM 508.9), Muscle (RPKM 355.6) and 9 other tissues See more
    Orthologs
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    Genomic context

    See Atp5f1d in Genome Data Viewer
    Location:
    7q11
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 7 NC_086025.1 (10211260..10218989, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 7 NC_051342.1 (9560604..9565919, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 7 NC_005106.4 (12426807..12432120, complement)

    Chromosome 7 - NC_086025.1Genomic Context describing neighboring genes Neighboring gene cold inducible RNA binding protein Neighboring gene midnolin Neighboring gene CACN subunit beta associated regulatory protein Neighboring gene serine/threonine kinase 11 Neighboring gene uncharacterized LOC134479811

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by RGD

    General protein information

    Preferred Names
    ATP synthase subunit delta, mitochondrial
    Names
    ATP synthase, H+ transporting, mitochondrial F1 complex, delta subunit
    F-ATPase delta subunit
    NP_620806.2
    XP_006240907.1
    XP_063119057.1
    XP_063119058.1
    XP_063119059.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_139106.2NP_620806.2  ATP synthase subunit delta, mitochondrial precursor

      Status: PROVISIONAL

      Source sequence(s)
      JAXUCZ010000007
      UniProtKB/Swiss-Prot
      P35434
      UniProtKB/TrEMBL
      A6K8Q6
      Conserved Domains (1) summary
      cd12152
      Location:38162
      F1-ATPase_delta; mitochondrial ATP synthase delta subunit

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086025.1 Reference GRCr8

      Range
      10211260..10218989 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063262988.1XP_063119058.1  ATP synthase subunit delta, mitochondrial isoform X1

      UniProtKB/TrEMBL
      G3V7Y3
    2. XM_006240845.4XP_006240907.1  ATP synthase subunit delta, mitochondrial isoform X1

      UniProtKB/TrEMBL
      G3V7Y3
      Related
      ENSRNOP00000020670.2, ENSRNOT00000020670.6
      Conserved Domains (2) summary
      cd12152
      Location:99223
      F1-ATPase_delta; mitochondrial ATP synthase delta subunit
      COG0355
      Location:98228
      AtpC; FoF1-type ATP synthase, epsilon subunit [Energy production and conversion]
    3. XM_063262989.1XP_063119059.1  ATP synthase subunit delta, mitochondrial isoform X1

      UniProtKB/TrEMBL
      G3V7Y3
    4. XM_063262987.1XP_063119057.1  ATP synthase subunit delta, mitochondrial isoform X1

      UniProtKB/TrEMBL
      G3V7Y3