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    Armcx6 armadillo repeat containing, X-linked 6 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 363496, updated on 9-Dec-2024

    Summary

    Official Symbol
    Armcx6provided by RGD
    Official Full Name
    armadillo repeat containing, X-linked 6provided by RGD
    Primary source
    RGD:1359303
    See related
    EnsemblRapid:ENSRNOG00000037707 AllianceGenome:RGD:1359303
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to be located in mitochondrial outer membrane. Predicted to be active in mitochondrion. Orthologous to human ARMCX6 (armadillo repeat containing X-linked 6). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Brain (RPKM 12.1), Lung (RPKM 8.9) and 9 other tissues See more
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    Genomic context

    See Armcx6 in Genome Data Viewer
    Location:
    Xq32
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) X NC_086039.1 (102222288..102229871, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) X NC_051356.1 (97929032..97932031, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) X NC_005120.4 (105565733..105573387, complement)

    Chromosome X - NC_086039.1Genomic Context describing neighboring genes Neighboring gene armadillo repeat containing, X-linked 1 Neighboring gene protein ARMCX6-like Neighboring gene armadillo repeat containing, X-linked 3 Neighboring gene armadillo repeat containing, X-linked 2

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General protein information

    Preferred Names
    protein ARMCX6
    Names
    arm protein lost in epithelial cancers, X chromosome, 3
    protein ARMCX6-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001007757.2NP_001007758.1  protein ARMCX6

      See identical proteins and their annotated locations for NP_001007758.1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000021
      UniProtKB/Swiss-Prot
      Q66HF0
      UniProtKB/TrEMBL
      A6IVH5
      Conserved Domains (1) summary
      pfam04826
      Location:107299
      Arm_2; Armadillo-like
    2. NM_001419692.1NP_001406621.1  protein ARMCX6

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000021
      UniProtKB/Swiss-Prot
      Q66HF0
      UniProtKB/TrEMBL
      A6IVH5

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086039.1 Reference GRCr8

      Range
      102222288..102229871 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063280152.1XP_063136222.1  protein ARMCX6 isoform X1

      UniProtKB/Swiss-Prot
      Q66HF0
      UniProtKB/TrEMBL
      A6IVH5
      Related
      ENSRNOP00000106578.1, ENSRNOT00000134739.1
    2. XM_063280151.1XP_063136221.1  protein ARMCX6 isoform X1

      UniProtKB/Swiss-Prot
      Q66HF0
      UniProtKB/TrEMBL
      A6IVH5