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    Slc18a3 solute carrier family 18 member A3 [ Rattus rattus (black rat) ]

    Gene ID: 116914557, updated on 18-Mar-2024

    Summary

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    Gene symbol
    Slc18a3
    Gene description
    solute carrier family 18 member A3
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Rattus rattus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Orthologs
    human mouse all
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    Genomic context

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    See Slc18a3 in Genome Data Viewer
    Location:
    chromosome: 13
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    100 current Rrattus_CSIRO_v1 (GCF_011064425.1) 13 NC_046166.1 (8173081..8175938, complement)

    Chromosome 13 - NC_046166.1Genomic Context describing neighboring genes Neighboring gene chromosome 13 C10orf53 homolog Neighboring gene choline O-acetyltransferase Neighboring gene 60S ribosomal protein L13a-like Neighboring gene ERCC excision repair 6, chromatin remodeling factor

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_046166.1 Chromosome 13 Reference Rrattus_CSIRO_v1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables acetylcholine transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in chemical synaptic transmission IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of AP-1 adaptor complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of AP-2 adaptor complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in terminal bouton IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    vesicular acetylcholine transporter

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Rattus rattus Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Rrattus_CSIRO_v1 Primary Assembly

    Genomic

    1. NC_046166.1 Reference Rrattus_CSIRO_v1 Primary Assembly

      Range
      8173081..8175938 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_032918906.1 → XP_032774797.1  vesicular acetylcholine transporter

      Conserved Domains (1) summary
      cd17383
      Location:36 → 459
      MFS_SLC18A3_VAChT; Vesicular acetylcholine transporter (VAChT) and similar transporters of the Major Facilitator Superfamily
    Nucleotide Protein
    Heading Accession and Version

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