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    KCNS1 potassium voltage-gated channel modifier subfamily S member 1 [ Ficedula albicollis (Collared flycatcher) ]

    Gene ID: 101805890, updated on 3-Aug-2024

    Summary

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    Gene symbol
    KCNS1
    Gene description
    potassium voltage-gated channel modifier subfamily S member 1
    See related
    Ensembl:ENSFALG00000005414
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Ficedula albicollis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Muscicapidae; Ficedula
    Orthologs
    human mouse all
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    Genomic context

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    See KCNS1 in Genome Data Viewer
    Location:
    chromosome: 20
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    101 current FicAlb1.5 (GCF_000247815.1) 20 NC_021691.1 (5900618..5915022)

    Chromosome 20 - NC_021691.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101806841 Neighboring gene WAP four-disulfide core domain protein 6A-like Neighboring gene serine/threonine kinase 4 Neighboring gene translocase of outer mitochondrial membrane 34

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_021691.1 Chromosome 20 Reference FicAlb1.5 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables delayed rectifier potassium channel activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in potassium ion transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein homooligomerization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of delayed rectifier potassium channel activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of voltage-gated potassium channel complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    potassium voltage-gated channel subfamily S member 1
    Names
    potassium voltage-gated channel, delayed-rectifier, subfamily S, member 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Ficedula albicollis Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference FicAlb1.5 Primary Assembly

    Genomic

    1. NC_021691.1 Reference FicAlb1.5 Primary Assembly

      Range
      5900618..5915022
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005057081.1 → XP_005057138.1  potassium voltage-gated channel subfamily S member 1 isoform X2

      See identical proteins and their annotated locations for XP_005057138.1

      UniProtKB/TrEMBL
      U3JS80
      Conserved Domains (4) summary
      smart00225
      Location:16 → 123
      BTB; Broad-Complex, Tramtrack and Bric a brac
      pfam00520
      Location:223 → 420
      Ion_trans; Ion transport protein
      pfam02214
      Location:18 → 117
      BTB_2; BTB/POZ domain
      pfam07885
      Location:330 → 414
      Ion_trans_2; Ion channel

    2. XM_005057082.1 → XP_005057139.1  potassium voltage-gated channel subfamily S member 1 isoform X2

      See identical proteins and their annotated locations for XP_005057139.1

      UniProtKB/TrEMBL
      U3JS80
      Conserved Domains (4) summary
      smart00225
      Location:16 → 123
      BTB; Broad-Complex, Tramtrack and Bric a brac
      pfam00520
      Location:223 → 420
      Ion_trans; Ion transport protein
      pfam02214
      Location:18 → 117
      BTB_2; BTB/POZ domain
      pfam07885
      Location:330 → 414
      Ion_trans_2; Ion channel

    3. XM_005057080.1 → XP_005057137.1  potassium voltage-gated channel subfamily S member 1 isoform X1

      UniProtKB/TrEMBL
      U3JS80
      Related
      ENSFALP00000005634.2, ENSFALT00000005661.2
      Conserved Domains (4) summary
      smart00225
      Location:61 → 168
      BTB; Broad-Complex, Tramtrack and Bric a brac
      pfam00520
      Location:268 → 465
      Ion_trans; Ion transport protein
      pfam02214
      Location:63 → 162
      BTB_2; BTB/POZ domain
      pfam07885
      Location:375 → 459
      Ion_trans_2; Ion channel
    Nucleotide Protein
    Heading Accession and Version

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