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    CNTN1 contactin 1 [ Otolemur garnettii (small-eared galago) ]

    Gene ID: 100952742, updated on 8-Mar-2024

    Summary

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    Gene symbol
    CNTN1
    Gene description
    contactin 1
    See related
    Ensembl:ENSOGAG00000001426
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Otolemur garnettii
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Strepsirrhini; Lorisiformes; Galagidae; Otolemur
    Orthologs
    human mouse all
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    Genomic context

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    See CNTN1 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    26
    Annotation release Status Assembly Chr Location
    102 current OtoGar3 (GCF_000181295.1) Unplaced Scaffold NW_003852465.1 (2048686..2393422)

    NW_003852465.1Genomic Context describing neighboring genes Neighboring gene DNA endonuclease RBBP8 pseudogene Neighboring gene leucine rich repeat kinase 2 Neighboring gene PDZ domain containing ring finger 4 Neighboring gene U6 spliceosomal RNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_003852465 Unplaced Scaffold Reference OtoGar3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cell-cell adhesion mediator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in brain development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cell-cell adhesion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    contactin-1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Otolemur garnettii Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference OtoGar3

    Genomic

    1. NW_003852465.1 Reference OtoGar3

      Range
      2048686..2393422
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003793535.2 → XP_003793583.1  contactin-1 isoform X1

      UniProtKB/TrEMBL
      H0WIK4
      Related
      ENSOGAP00000001271.2, ENSOGAT00000001430.2
      Conserved Domains (10) summary
      cd04970
      Location:520 → 601
      Ig6_Contactin_like; Sixth Ig domain of contactin
      cd05727
      Location:134 → 230
      Ig2_Contactin-2-like; Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins
      cd05849
      Location:40 → 132
      Ig1_Contactin-1; First Ig domain of contactin-1
      cd05851
      Location:241 → 328
      Ig3_Contactin-1; Third Ig domain of contactin-1
      cd05852
      Location:429 → 501
      Ig5_Contactin-1; Fifth Ig domain of contactin-1
      smart00410
      Location:422 → 501
      IG_like; Immunoglobulin like
      cd00063
      Location:610 → 701
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam07679
      Location:331 → 408
      I-set; Immunoglobulin I-set domain
      pfam00041
      Location:811 → 893
      fn3; Fibronectin type III domain
      cl11960
      Location:332 → 408
      Ig; Immunoglobulin domain

    2. XM_012807477.1 → XP_012662931.1  contactin-1 isoform X3

      See identical proteins and their annotated locations for XP_012662931.1

      Conserved Domains (8) summary
      cd04970
      Location:520 → 602
      Ig6_Contactin_like; Sixth Ig domain of contactin
      cd05727
      Location:134 → 230
      Ig2_Contactin-2-like; Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins
      cd05849
      Location:40 → 132
      Ig1_Contactin-1; First Ig domain of contactin-1
      cd05851
      Location:241 → 328
      Ig3_Contactin-1; Third Ig domain of contactin-1
      cd05852
      Location:429 → 501
      Ig5_Contactin-1; Fifth Ig domain of contactin-1
      smart00410
      Location:422 → 501
      IG_like; Immunoglobulin like
      pfam07679
      Location:331 → 408
      I-set; Immunoglobulin I-set domain
      cl11960
      Location:332 → 408
      Ig; Immunoglobulin domain

    3. XM_012807476.1 → XP_012662930.1  contactin-1 isoform X3

      See identical proteins and their annotated locations for XP_012662930.1

      Conserved Domains (8) summary
      cd04970
      Location:520 → 602
      Ig6_Contactin_like; Sixth Ig domain of contactin
      cd05727
      Location:134 → 230
      Ig2_Contactin-2-like; Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins
      cd05849
      Location:40 → 132
      Ig1_Contactin-1; First Ig domain of contactin-1
      cd05851
      Location:241 → 328
      Ig3_Contactin-1; Third Ig domain of contactin-1
      cd05852
      Location:429 → 501
      Ig5_Contactin-1; Fifth Ig domain of contactin-1
      smart00410
      Location:422 → 501
      IG_like; Immunoglobulin like
      pfam07679
      Location:331 → 408
      I-set; Immunoglobulin I-set domain
      cl11960
      Location:332 → 408
      Ig; Immunoglobulin domain

    4. XM_003793536.2 → XP_003793584.1  contactin-1 isoform X2

      UniProtKB/TrEMBL
      H0WIK4
      Conserved Domains (10) summary
      cd04970
      Location:509 → 590
      Ig6_Contactin_like; Sixth Ig domain of contactin
      cd05727
      Location:123 → 219
      Ig2_Contactin-2-like; Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins
      cd05849
      Location:29 → 121
      Ig1_Contactin-1; First Ig domain of contactin-1
      cd05851
      Location:230 → 317
      Ig3_Contactin-1; Third Ig domain of contactin-1
      cd05852
      Location:418 → 490
      Ig5_Contactin-1; Fifth Ig domain of contactin-1
      smart00410
      Location:411 → 490
      IG_like; Immunoglobulin like
      cd00063
      Location:599 → 690
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam07679
      Location:320 → 397
      I-set; Immunoglobulin I-set domain
      pfam00041
      Location:800 → 882
      fn3; Fibronectin type III domain
      cl11960
      Location:321 → 397
      Ig; Immunoglobulin domain
    Nucleotide Protein
    Heading Accession and Version

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