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    LOC9656413 polyadenylate-binding protein RBP47B' [ Selaginella moellendorffii ]

    Gene ID: 9656413, updated on 22-Oct-2023

    Summary

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    Gene symbol
    LOC9656413
    Gene description
    polyadenylate-binding protein RBP47B'
    Locus tag
    SELMODRAFT_232989
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Selaginella moellendorffii
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Lycopodiopsida; Selaginellales; Selaginellaceae; Selaginella
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    Genomic context

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    See LOC9656413 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    100 current v1.0 (GCF_000143415.4) Unplaced Scaffold NW_003314296.1 (100520..107690, complement)

    NW_003314296.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112349107 Neighboring gene cytochrome P450 78A4 Neighboring gene uncharacterized LOC112349105 Neighboring gene pentatricopeptide repeat-containing protein At2g13600-like Neighboring gene BEACH domain-containing protein B Neighboring gene nudix hydrolase 19, chloroplastic

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_003314296 Unplaced Scaffold Reference v1.0

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in RNA modification IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pentatricopeptide repeat-containing protein At1g11290, chloroplastic; pentatricopeptide repeat-containing protein At3g09040, mitochondrial; pentatricopeptide repeat-containing protein At4g14050, mitochondrial; polyadenylate-binding protein RBP47B'

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Selaginella moellendorffii Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference v1.0

    Genomic

    1. NW_003314296.1 Reference v1.0

      Range
      100520..107690 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024682896.1 → XP_024538664.1  pentatricopeptide repeat-containing protein At4g14050, mitochondrial isoform X1

      Conserved Domains (2) summary
      sd00004
      Location:480 → 506
      PPR; PPR repeat [structural motif]
      cl25449
      Location:1 → 783
      PPR_2; PPR repeat family

    2. XM_024682895.1 → XP_024538663.1  pentatricopeptide repeat-containing protein At4g14050, mitochondrial isoform X1

      Conserved Domains (2) summary
      sd00004
      Location:480 → 506
      PPR; PPR repeat [structural motif]
      cl25449
      Location:1 → 783
      PPR_2; PPR repeat family

    3. XM_024682897.1 → XP_024538665.1  pentatricopeptide repeat-containing protein At3g09040, mitochondrial isoform X2

      Conserved Domains (2) summary
      sd00004
      Location:449 → 474
      PPR; PPR repeat [structural motif]
      cl25449
      Location:1 → 538
      PPR_2; PPR repeat family

    4. XM_024682898.1 → XP_024538666.1  pentatricopeptide repeat-containing protein At3g09040, mitochondrial isoform X3

      Conserved Domains (2) summary
      sd00004
      Location:449 → 474
      PPR; PPR repeat [structural motif]
      cl25449
      Location:1 → 543
      PPR_2; PPR repeat family

    5. XM_024682901.1 → XP_024538669.1  pentatricopeptide repeat-containing protein At4g14050, mitochondrial isoform X7

      Conserved Domains (2) summary
      sd00004
      Location:114 → 139
      PPR; PPR repeat [structural motif]
      cl25449
      Location:1 → 421
      PPR_2; PPR repeat family

    6. XM_024682902.1 → XP_024538670.1  pentatricopeptide repeat-containing protein At1g11290, chloroplastic isoform X8

      Conserved Domains (2) summary
      sd00004
      Location:114 → 139
      PPR; PPR repeat [structural motif]
      cl25449
      Location:1 → 378
      PPR_2; PPR repeat family

    7. XM_024682900.1 → XP_024538668.1  polyadenylate-binding protein RBP47B' isoform X6

      UniProtKB/TrEMBL
      D8S2T9
      Conserved Domains (4) summary
      cd12344
      Location:68 → 148
      RRM1_SECp43_like; RNA recognition motif 1 in tRNA selenocysteine-associated protein 1 (SECp43) and similar proteins
      cd12345
      Location:159 → 238
      RRM2_SECp43_like; RNA recognition motif 2 in tRNA selenocysteine-associated protein 1 (SECp43) and similar proteins
      cd12346
      Location:304 → 375
      RRM3_NGR1_NAM8_like; RNA recognition motif 3 in yeast negative growth regulatory protein NGR1 (RBP1), yeast protein NAM8 and similar proteins
      cl25617
      Location:295 → 445
      LSM_int_assoc; LSM-interacting associated unstructured

    8. XM_024682899.1 → XP_024538667.1  polyadenylate-binding protein RBP47B' isoform X5

      UniProtKB/TrEMBL
      D8S2T9
      Conserved Domains (3) summary
      cd12344
      Location:68 → 148
      RRM1_SECp43_like; RNA recognition motif 1 in tRNA selenocysteine-associated protein 1 (SECp43) and similar proteins
      cd12345
      Location:159 → 238
      RRM2_SECp43_like; RNA recognition motif 2 in tRNA selenocysteine-associated protein 1 (SECp43) and similar proteins
      cd12346
      Location:303 → 374
      RRM3_NGR1_NAM8_like; RNA recognition motif 3 in yeast negative growth regulatory protein NGR1 (RBP1), yeast protein NAM8 and similar proteins

    9. XM_002977765.2 → XP_002977811.2  polyadenylate-binding protein RBP47B' isoform X4

      UniProtKB/TrEMBL
      D8S2T9
      Conserved Domains (3) summary
      cd12344
      Location:68 → 148
      RRM1_SECp43_like; RNA recognition motif 1 in tRNA selenocysteine-associated protein 1 (SECp43) and similar proteins
      cd12345
      Location:159 → 238
      RRM2_SECp43_like; RNA recognition motif 2 in tRNA selenocysteine-associated protein 1 (SECp43) and similar proteins
      cd12346
      Location:304 → 375
      RRM3_NGR1_NAM8_like; RNA recognition motif 3 in yeast negative growth regulatory protein NGR1 (RBP1), yeast protein NAM8 and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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