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    TRIM13 tripartite motif containing 13 [ Vombatus ursinus (common wombat) ]

    Gene ID: 114039228, updated on 15-Mar-2024

    Summary

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    Gene symbol
    TRIM13
    Gene description
    tripartite motif containing 13
    See related
    Ensembl:ENSVURG00010017906
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Vombatus ursinus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Diprotodontia; Vombatidae; Vombatus
    Orthologs
    human mouse all
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    Genomic context

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    See TRIM13 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    100 current bare-nosed wombat genome assembly (GCF_900497805.2) Unplaced Scaffold NW_020951478.1 (8108637..8124079, complement)

    NW_020951478.1Genomic Context describing neighboring genes Neighboring gene deleted in lymphocytic leukemia 7 Neighboring gene uncharacterized LOC114039238 Neighboring gene uncharacterized LOC114039230 Neighboring gene potassium channel regulator Neighboring gene SPRY domain containing 7

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_020951478 Unplaced Scaffold Reference bare-nosed wombat genome assembly Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in innate immune response IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of NF-kappaB transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of canonical NF-kappaB signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of macroautophagy IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    E3 ubiquitin-protein ligase TRIM13

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Vombatus ursinus Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bare-nosed wombat genome assembly Primary Assembly

    Genomic

    1. NW_020951478.1 Reference bare-nosed wombat genome assembly Primary Assembly

      Range
      8108637..8124079 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_027856917.1 → XP_027712718.1  E3 ubiquitin-protein ligase TRIM13

      UniProtKB/TrEMBL
      A0A4X2LEL1
      Related
      ENSVURP00010023359.1, ENSVURT00010026589.1
    Nucleotide Protein
    Heading Accession and Version

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