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    TUBE1 tubulin epsilon 1 [ Calypte anna (Anna's hummingbird) ]

    Gene ID: 103530030, updated on 3-Aug-2024

    Summary

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    Gene symbol
    TUBE1
    Gene description
    tubulin epsilon 1
    Locus tag
    N300_10765
    See related
    EnsemblRapid:ENSCAAG00010008952
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Calypte anna
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Strisores; Apodiformes; Trochilidae; Calypte
    Orthologs
    human mouse all
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    Genomic context

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    See TUBE1 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    101 current bCalAnn1_v1.p (GCF_003957555.1) 3 NC_044246.1 (68995832..69018210)
    100 previous assembly ASM69908v1 (GCF_000699085.1) Unplaced Scaffold NW_007620263.1 (1586143..1601893)

    Chromosome 3 - NC_044246.1Genomic Context describing neighboring genes Neighboring gene myristoylated alanine rich protein kinase C substrate Neighboring gene laminin subunit alpha 4 Neighboring gene cellular communication network factor 6 Neighboring gene FYN proto-oncogene, Src family tyrosine kinase

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables GTP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables structural constituent of cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in microtubule cytoskeleton organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in mitotic cell cycle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in microtubule IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    tubulin epsilon chain
    Names
    Tubulin epsilon chain

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Calypte anna Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bCalAnn1_v1.p

    Genomic

    1. NC_044246.1 Reference bCalAnn1_v1.p

      Range
      68995832..69018210
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008495557.2 → XP_008493779.2  tubulin epsilon chain

      UniProtKB/TrEMBL
      A0A091I439
      Related
      ENSCAAP00010012350.1, ENSCAAT00010013067.1
      Conserved Domains (1) summary
      cd02190
      Location:2 → 457
      epsilon_tubulin; The epsilon-tubulin family
    Nucleotide Protein
    Heading Accession and Version

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