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    TRIM13 tripartite motif containing 13 [ Sarcophilus harrisii (Tasmanian devil) ]

    Gene ID: 100920821, updated on 8-Mar-2024

    Summary

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    Gene symbol
    TRIM13
    Gene description
    tripartite motif containing 13
    See related
    Ensembl:ENSSHAG00000027943
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sarcophilus harrisii
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Dasyuromorphia; Dasyuridae; Sarcophilus
    Orthologs
    human mouse all
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    Genomic context

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    See TRIM13 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    103 current mSarHar1.11 (GCF_902635505.1) 3 NC_045428.1 (522264861..522322567)
    102 previous assembly Devil_ref v7.0 (GCF_000189315.1) 3 Unlocalized Scaffold NW_003838070.1 (16305..26102, complement)

    Chromosome 3 - NC_045428.1Genomic Context describing neighboring genes Neighboring gene karyopherin subunit alpha 3 Neighboring gene U6 spliceosomal RNA Neighboring gene SPRY domain containing 7 Neighboring gene uncharacterized LOC100921869 Neighboring gene potassium channel regulator

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in innate immune response IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of NF-kappaB transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of canonical NF-kappaB signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of macroautophagy IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    E3 ubiquitin-protein ligase TRIM13

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sarcophilus harrisii Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mSarHar1.11 Primary Assembly

    Genomic

    1. NC_045428.1 Reference mSarHar1.11 Primary Assembly

      Range
      522264861..522322567
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_031961954.1 → XP_031817814.1  E3 ubiquitin-protein ligase TRIM13 isoform X2

      UniProtKB/TrEMBL
      A0A7N4PDL6
      Conserved Domains (2) summary
      cd16762
      Location:6 → 62
      RING-HC_TRIM13_C-V; RING finger, HC subclass, found in tripartite motif-containing protein 13 (TRIM13) and similar proteins
      cd19767
      Location:93 → 134
      Bbox2_TRIM13_C-XI; B-box-type 2 zinc finger found in tripartite motif-containing protein 13 (TRIM13) and similar proteins

    2. XM_031961953.1 → XP_031817813.1  E3 ubiquitin-protein ligase TRIM13 isoform X2

      UniProtKB/TrEMBL
      A0A7N4PDL6
      Conserved Domains (2) summary
      cd16762
      Location:6 → 62
      RING-HC_TRIM13_C-V; RING finger, HC subclass, found in tripartite motif-containing protein 13 (TRIM13) and similar proteins
      cd19767
      Location:93 → 134
      Bbox2_TRIM13_C-XI; B-box-type 2 zinc finger found in tripartite motif-containing protein 13 (TRIM13) and similar proteins

    3. XM_031961952.1 → XP_031817812.1  E3 ubiquitin-protein ligase TRIM13 isoform X1

      UniProtKB/TrEMBL
      G3VFV3
      Related
      ENSSHAP00000002057.2, ENSSHAT00000002080.2
      Conserved Domains (2) summary
      cd16762
      Location:22 → 78
      RING-HC_TRIM13_C-V; RING finger, HC subclass, found in tripartite motif-containing protein 13 (TRIM13) and similar proteins
      cd19767
      Location:109 → 150
      Bbox2_TRIM13_C-XI; B-box-type 2 zinc finger found in tripartite motif-containing protein 13 (TRIM13) and similar proteins

    4. XM_023501495.2 → XP_023357263.1  E3 ubiquitin-protein ligase TRIM13 isoform X2

      UniProtKB/TrEMBL
      A0A7N4PDL6
      Conserved Domains (2) summary
      cd16762
      Location:6 → 62
      RING-HC_TRIM13_C-V; RING finger, HC subclass, found in tripartite motif-containing protein 13 (TRIM13) and similar proteins
      cd19767
      Location:93 → 134
      Bbox2_TRIM13_C-XI; B-box-type 2 zinc finger found in tripartite motif-containing protein 13 (TRIM13) and similar proteins

    5. XM_003767057.4 → XP_003767105.2  E3 ubiquitin-protein ligase TRIM13 isoform X2

      UniProtKB/TrEMBL
      A0A7N4PDL6
      Related
      ENSSHAP00000035945.1, ENSSHAT00000049835.1
      Conserved Domains (2) summary
      cd16762
      Location:6 → 62
      RING-HC_TRIM13_C-V; RING finger, HC subclass, found in tripartite motif-containing protein 13 (TRIM13) and similar proteins
      cd19767
      Location:93 → 134
      Bbox2_TRIM13_C-XI; B-box-type 2 zinc finger found in tripartite motif-containing protein 13 (TRIM13) and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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