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    RNF20 ring finger protein 20 [ Corvus moneduloides (New Caledonian crow) ]

    Gene ID: 116438106, updated on 3-Aug-2024

    Summary

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    Gene symbol
    RNF20
    Gene description
    ring finger protein 20
    See related
    Ensembl:ENSCMUG00005013777
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Corvus moneduloides
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Corvoidea; Corvidae; Corvus
    Orthologs
    human mouse all
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    Genomic context

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    See RNF20 in Genome Data Viewer
    Location:
    chromosome: Z
    Exon count:
    24
    Annotation release Status Assembly Chr Location
    100 current bCorMon1.pri (GCF_009650955.1) Z NC_045511.1 (25712927..25732176, complement)

    Chromosome Z - NC_045511.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC116438117 Neighboring gene uncharacterized LOC116438131 Neighboring gene glutamate ionotropic receptor NMDA type subunit 3A Neighboring gene uncharacterized LOC116438128 Neighboring gene post-GPI attachment to proteins GalNAc transferase 4 Neighboring gene aldolase, fructose-bisphosphate B

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_045511.1 Chromosome Z Reference bCorMon1.pri

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin protein ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of HULC complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    E3 ubiquitin-protein ligase BRE1A

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Corvus moneduloides Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bCorMon1.pri

    Genomic

    1. NC_045511.1 Reference bCorMon1.pri

      Range
      25712927..25732176 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_032096741.1 → XP_031952632.1  E3 ubiquitin-protein ligase BRE1A isoform X3

      UniProtKB/TrEMBL
      A0A851WWX2, A0A8C3D6U6, A0A8U7NS25
      Conserved Domains (3) summary
      PTZ00121
      Location:322 → 926
      PTZ00121; MAEBL; Provisional
      COG1196
      Location:41 → 394
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      cd16704
      Location:929 → 974
      RING-HC_RNF20_like; RING finger, HC subclass, found in RING finger protein RNF20, RNF40, and similar proteins

    2. XM_032096735.1 → XP_031952626.1  E3 ubiquitin-protein ligase BRE1A isoform X1

      UniProtKB/TrEMBL
      A0A851WWX2
      Conserved Domains (3) summary
      PTZ00121
      Location:365 → 969
      PTZ00121; MAEBL; Provisional
      COG1196
      Location:84 → 437
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      cd16704
      Location:972 → 1017
      RING-HC_RNF20_like; RING finger, HC subclass, found in RING finger protein RNF20, RNF40, and similar proteins

    3. XM_032096738.1 → XP_031952629.1  E3 ubiquitin-protein ligase BRE1A isoform X3

      UniProtKB/TrEMBL
      A0A851WWX2, A0A8C3D6U6, A0A8U7NS25
      Conserved Domains (3) summary
      PTZ00121
      Location:322 → 926
      PTZ00121; MAEBL; Provisional
      COG1196
      Location:41 → 394
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      cd16704
      Location:929 → 974
      RING-HC_RNF20_like; RING finger, HC subclass, found in RING finger protein RNF20, RNF40, and similar proteins

    4. XM_032096742.1 → XP_031952633.1  E3 ubiquitin-protein ligase BRE1A isoform X3

      UniProtKB/TrEMBL
      A0A851WWX2, A0A8C3D6U6, A0A8U7NS25
      Conserved Domains (3) summary
      PTZ00121
      Location:322 → 926
      PTZ00121; MAEBL; Provisional
      COG1196
      Location:41 → 394
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      cd16704
      Location:929 → 974
      RING-HC_RNF20_like; RING finger, HC subclass, found in RING finger protein RNF20, RNF40, and similar proteins

    5. XM_032096737.1 → XP_031952628.1  E3 ubiquitin-protein ligase BRE1A isoform X3

      UniProtKB/TrEMBL
      A0A851WWX2, A0A8C3D6U6, A0A8U7NS25
      Related
      ENSCMUP00005022230.1, ENSCMUT00005023796.1
      Conserved Domains (3) summary
      PTZ00121
      Location:322 → 926
      PTZ00121; MAEBL; Provisional
      COG1196
      Location:41 → 394
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      cd16704
      Location:929 → 974
      RING-HC_RNF20_like; RING finger, HC subclass, found in RING finger protein RNF20, RNF40, and similar proteins

    6. XM_032096744.1 → XP_031952635.1  E3 ubiquitin-protein ligase BRE1A isoform X3

      UniProtKB/TrEMBL
      A0A851WWX2, A0A8C3D6U6, A0A8U7NS25
      Related
      ENSCMUP00005022250.1, ENSCMUT00005023816.1
      Conserved Domains (3) summary
      PTZ00121
      Location:322 → 926
      PTZ00121; MAEBL; Provisional
      COG1196
      Location:41 → 394
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      cd16704
      Location:929 → 974
      RING-HC_RNF20_like; RING finger, HC subclass, found in RING finger protein RNF20, RNF40, and similar proteins

    7. XM_032096736.1 → XP_031952627.1  E3 ubiquitin-protein ligase BRE1A isoform X2

      UniProtKB/TrEMBL
      A0A851WWX2
      Conserved Domains (3) summary
      PTZ00121
      Location:410 → 1014
      PTZ00121; MAEBL; Provisional
      COG1196
      Location:129 → 482
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      cd16704
      Location:1017 → 1062
      RING-HC_RNF20_like; RING finger, HC subclass, found in RING finger protein RNF20, RNF40, and similar proteins

    8. XM_032096740.1 → XP_031952631.1  E3 ubiquitin-protein ligase BRE1A isoform X3

      UniProtKB/TrEMBL
      A0A851WWX2, A0A8C3D6U6, A0A8U7NS25
      Conserved Domains (3) summary
      PTZ00121
      Location:322 → 926
      PTZ00121; MAEBL; Provisional
      COG1196
      Location:41 → 394
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      cd16704
      Location:929 → 974
      RING-HC_RNF20_like; RING finger, HC subclass, found in RING finger protein RNF20, RNF40, and similar proteins

    9. XM_032096739.1 → XP_031952630.1  E3 ubiquitin-protein ligase BRE1A isoform X3

      UniProtKB/TrEMBL
      A0A851WWX2, A0A8C3D6U6, A0A8U7NS25
      Conserved Domains (3) summary
      PTZ00121
      Location:322 → 926
      PTZ00121; MAEBL; Provisional
      COG1196
      Location:41 → 394
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      cd16704
      Location:929 → 974
      RING-HC_RNF20_like; RING finger, HC subclass, found in RING finger protein RNF20, RNF40, and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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