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    LOC117448877 prickle-like protein 2 [ Pseudochaenichthys georgianus (South Georgia icefish) ]

    Gene ID: 117448877, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC117448877
    Gene description
    prickle-like protein 2
    See related
    EnsemblRapid:ENSPGEG00000007341
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Pseudochaenichthys georgianus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Notothenioidei; Channichthyidae; Pseudochaenichthys
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    Genomic context

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    See LOC117448877 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    100 current fPseGeo1.1 (GCF_902827115.1) 7 NC_047509.1 (13897706..13942802, complement)

    Chromosome 7 - NC_047509.1Genomic Context describing neighboring genes Neighboring gene receptor-type tyrosine-protein phosphatase V-like Neighboring gene periphilin-1 Neighboring gene rhodopsin Neighboring gene membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_047509.1 Chromosome 7 Reference fPseGeo1.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    prickle-like protein 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Pseudochaenichthys georgianus Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fPseGeo1.1

    Genomic

    1. NC_047509.1 Reference fPseGeo1.1

      Range
      13897706..13942802 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_034086177.1 → XP_033942068.1  prickle-like protein 2 isoform X3

      Conserved Domains (4) summary
      cd09415
      Location:126 → 184
      LIM1_Prickle; The first LIM domain of Prickle
      cd09418
      Location:189 → 244
      LIM2_Prickle; The second LIM domain of Prickle
      cd09420
      Location:249 → 307
      LIM3_Prickle; The third LIM domain of Prickle
      cd09827
      Location:22 → 118
      PET_Prickle; The PET domain of Prickle

    2. XM_034086176.1 → XP_033942067.1  prickle-like protein 2 isoform X2

      Conserved Domains (4) summary
      cd09415
      Location:152 → 210
      LIM1_Prickle; The first LIM domain of Prickle
      cd09418
      Location:215 → 270
      LIM2_Prickle; The second LIM domain of Prickle
      cd09420
      Location:275 → 333
      LIM3_Prickle; The third LIM domain of Prickle
      cd09827
      Location:48 → 144
      PET_Prickle; The PET domain of Prickle

    3. XM_034086175.1 → XP_033942066.1  prickle-like protein 2 isoform X1

      Related
      ENSPGEP00000015208.1, ENSPGET00000015886.1
      Conserved Domains (4) summary
      cd09415
      Location:152 → 210
      LIM1_Prickle; The first LIM domain of Prickle
      cd09418
      Location:215 → 270
      LIM2_Prickle; The second LIM domain of Prickle
      cd09420
      Location:275 → 333
      LIM3_Prickle; The third LIM domain of Prickle
      cd09827
      Location:48 → 144
      PET_Prickle; The PET domain of Prickle
    Nucleotide Protein
    Heading Accession and Version

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