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    Trim50 tripartite motif containing 50 [ Arvicanthis niloticus (Nile rat) ]

    Gene ID: 117698114, updated on 19-Mar-2024

    Summary

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    Gene symbol
    Trim50
    Gene description
    tripartite motif containing 50
    See related
    EnsemblRapid:ENSANLG00005022540
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Arvicanthis niloticus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Arvicanthis
    Orthologs
    human mouse all
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    Genomic context

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    See Trim50 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    100 current mArvNil1.pat.X (GCF_011762505.1) Unplaced Scaffold NW_023044994.1 (25618021..25633027)

    NW_023044994.1Genomic Context describing neighboring genes Neighboring gene frizzled class receptor 9 Neighboring gene FKBP prolyl isomerase family member 6 (inactive) Neighboring gene nuclear envelope pore membrane protein POM 121 Neighboring gene NOP2/Sun RNA methyltransferase 5 Neighboring gene huntingtin interacting protein 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_023044994 Unplaced Scaffold Reference mArvNil1.pat.X

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    E3 ubiquitin-protein ligase TRIM50

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Arvicanthis niloticus Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mArvNil1.pat.X

    Genomic

    1. NW_023044994.1 Reference mArvNil1.pat.X

      Range
      25618021..25633027
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_034489530.1 → XP_034345421.1  E3 ubiquitin-protein ligase TRIM50 isoform X1

      Related
      ENSANLP00005027920.1, ENSANLT00005031801.1
      Conserved Domains (4) summary
      smart00502
      Location:133 → 259
      BBC; B-Box C-terminal domain
      cd13743
      Location:283 → 471
      SPRY_PRY_TRIM50; PRY/SPRY domain in tripartite motif-binding protein 50 (TRIM50)
      cd16605
      Location:14 → 58
      RING-HC_TRIM50_like_C-IV; RING finger, HC subclass, found in tripartite motif-containing protein TRIM50, TRIM73, TRIM74 and similar proteins
      cl00034
      Location:88 → 125
      Bbox_SF; B-box-type zinc finger superfamily

    2. XM_034489531.1 → XP_034345422.1  E3 ubiquitin-protein ligase TRIM50 isoform X2

      Conserved Domains (4) summary
      smart00502
      Location:133 → 231
      BBC; B-Box C-terminal domain
      cd13743
      Location:282 → 470
      SPRY_PRY_TRIM50; PRY/SPRY domain in tripartite motif-binding protein 50 (TRIM50)
      cd16605
      Location:14 → 58
      RING-HC_TRIM50_like_C-IV; RING finger, HC subclass, found in tripartite motif-containing protein TRIM50, TRIM73, TRIM74 and similar proteins
      cl00034
      Location:88 → 125
      Bbox_SF; B-box-type zinc finger superfamily
    Nucleotide Protein
    Heading Accession and Version

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