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    Apoa1 apolipoprotein A1 [ Peromyscus maniculatus bairdii (prairie deer mouse) ]

    Gene ID: 102925471, updated on 10-Mar-2024

    Summary

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    Gene symbol
    Apoa1
    Gene description
    apolipoprotein A1
    See related
    Ensembl:ENSPEMG00000011979
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Peromyscus maniculatus bairdii (sub-species: bairdii)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Neotominae; Peromyscus
    Also known as
    Apo-AI; ApoA-I
    Orthologs
    human mouse all
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    Genomic context

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    See Apoa1 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    102 current HU_Pman_2.1.3 (GCF_003704035.1) 7 NC_056014.1 (40986209..40988085)
    101 previous assembly Pman_1.0 (GCF_000500345.1) Unplaced Scaffold NW_006502156.1 (244726..246662)

    Chromosome 7 - NC_056014.1Genomic Context describing neighboring genes Neighboring gene platelet activating factor acetylhydrolase 1b catalytic subunit 2 Neighboring gene POU domain, class 5, transcription factor 1-like Neighboring gene SIK family kinase 3 Neighboring gene apolipoprotein C3 Neighboring gene apolipoprotein A4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables high-density lipoprotein particle receptor binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables lipid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in lipid transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in lipoprotein metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    apolipoprotein A-I
    Names
    Apolipoprotein A-I

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Peromyscus maniculatus bairdii Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference HU_Pman_2.1.3 Primary Assembly

    Genomic

    1. NC_056014.1 Reference HU_Pman_2.1.3 Primary Assembly

      Range
      40986209..40988085
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006996686.3 → XP_006996748.1  apolipoprotein A-I

      UniProtKB/Swiss-Prot
      P0DTV2
      UniProtKB/TrEMBL
      A0A6I9M630
      Related
      ENSPEMP00000011287.1
      Conserved Domains (2) summary
      pfam01442
      Location:73 → 239
      Apolipoprotein; Apolipoprotein A1/A4/E domain
      pfam03037
      Location:82 → 145
      KMP11; Kinetoplastid membrane protein 11
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P0DTV2.1 GenPept UniProtKB/Swiss-Prot:P0DTV2

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