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    LOC118250854 T-box transcription factor TBX20 [ Cygnus atratus (black swan) ]

    Gene ID: 118250854, updated on 23-Nov-2023

    Summary

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    Gene symbol
    LOC118250854
    Gene description
    T-box transcription factor TBX20
    See related
    EnsemblRapid:ENSACYG00000001250
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cygnus atratus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Anseriformes; Anatidae; Anserinae; Cygnus
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    Genomic context

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    See LOC118250854 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    31
    Annotation release Status Assembly Chr Location
    RS_2023_02 current CAtr_DNAZoo_HiC_assembly (GCF_013377495.2) 2 NC_066363.1 (63011329..63128657, complement)
    100 previous assembly Cygnus_atratus_primary_v1.0 (GCF_013377495.1) Unplaced Scaffold NW_023336618.1 (2484126..2600890)

    Chromosome 2 - NC_066363.1Genomic Context describing neighboring genes Neighboring gene FANCD2 opposite strand Neighboring gene neuropeptide S receptor 1 Neighboring gene uncharacterized LOC118250946 Neighboring gene HERPUD family member 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables mannosyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell fate specification IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in heart looping IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein C-linked glycosylation via 2'-alpha-mannosyl-L-tryptophan IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in vasculogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nuclear inner membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    T-box transcription factor TBX20; probable C-mannosyltransferase DPY19L1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_013377495.2-RS_2023_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference CAtr_DNAZoo_HiC_assembly Primary Assembly

    Genomic

    1. NC_066363.1 Reference CAtr_DNAZoo_HiC_assembly Primary Assembly

      Range
      63011329..63128657 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_035552350.2 → XP_035408243.1  probable C-mannosyltransferase DPY19L1 isoform X2

      Related
      ENSACYP00000002348.1
      Conserved Domains (2) summary
      pfam10034
      Location:330 → 973
      Dpy19; Q-cell neuroblast polarisation
      cd20193
      Location:94 → 283
      T-box_TBX20-like; DNA-binding domain of T-box transcription factor 20 and related T-box proteins

    2. XM_035552352.2 → XP_035408245.1  probable C-mannosyltransferase DPY19L1 isoform X4

      Conserved Domains (2) summary
      pfam10034
      Location:353 → 950
      Dpy19; Q-cell neuroblast polarisation
      cd20193
      Location:94 → 283
      T-box_TBX20-like; DNA-binding domain of T-box transcription factor 20 and related T-box proteins

    3. XM_035552351.2 → XP_035408244.1  probable C-mannosyltransferase DPY19L1 isoform X3

      Related
      ENSACYP00000002033.1
      Conserved Domains (2) summary
      pfam10034
      Location:353 → 954
      Dpy19; Q-cell neuroblast polarisation
      cd20193
      Location:94 → 283
      T-box_TBX20-like; DNA-binding domain of T-box transcription factor 20 and related T-box proteins

    4. XM_035552349.2 → XP_035408242.1  probable C-mannosyltransferase DPY19L1 isoform X1

      Related
      ENSACYP00000002097.1
      Conserved Domains (2) summary
      pfam10034
      Location:353 → 996
      Dpy19; Q-cell neuroblast polarisation
      cd20193
      Location:94 → 283
      T-box_TBX20-like; DNA-binding domain of T-box transcription factor 20 and related T-box proteins

    5. XM_035552354.2 → XP_035408247.1  probable C-mannosyltransferase DPY19L1 isoform X6

      Related
      ENSACYP00000002499.1
      Conserved Domains (1) summary
      pfam10034
      Location:67 → 710
      Dpy19; Q-cell neuroblast polarisation

    6. XM_035552353.2 → XP_035408246.1  probable C-mannosyltransferase DPY19L1 isoform X5

      Related
      ENSACYP00000002430.1
      Conserved Domains (1) summary
      pfam10034
      Location:121 → 764
      Dpy19; Q-cell neuroblast polarisation

    7. XM_035552356.2 → XP_035408249.1  T-box transcription factor TBX20 isoform X7

      Conserved Domains (1) summary
      cd20193
      Location:94 → 283
      T-box_TBX20-like; DNA-binding domain of T-box transcription factor 20 and related T-box proteins
    Nucleotide Protein
    Heading Accession and Version

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