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    GRIN1 glutamate ionotropic receptor NMDA type subunit 1 [ Cygnus atratus (black swan) ]

    Gene ID: 118257057, updated on 20-Mar-2024

    Summary

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    Gene symbol
    GRIN1
    Gene description
    glutamate ionotropic receptor NMDA type subunit 1
    See related
    EnsemblRapid:ENSACYG00000010066
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cygnus atratus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Anseriformes; Anatidae; Anserinae; Cygnus
    Orthologs
    human mouse all
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    Genomic context

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    See GRIN1 in Genome Data Viewer
    Location:
    chromosome: 19
    Exon count:
    22
    Annotation release Status Assembly Chr Location
    RS_2023_02 current CAtr_DNAZoo_HiC_assembly (GCF_013377495.2) 19 NC_066380.1 (11114841..11148009)
    100 previous assembly Cygnus_atratus_primary_v1.0 (GCF_013377495.1) Unplaced Scaffold NW_023336677.1 (549308..582476, complement)

    Chromosome 19 - NC_066380.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein 618 Neighboring gene cholesterol 7-desaturase nvd-like Neighboring gene leucine rich repeat containing 26 Neighboring gene ring finger protein 224

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables NMDA glutamate receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in chemical synaptic transmission IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in ionotropic glutamate receptor signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in monoatomic ion transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of membrane potential IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of NMDA selective glutamate receptor complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in neuron projection IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in synapse IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    glutamate receptor ionotropic, NMDA 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_013377495.2-RS_2023_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference CAtr_DNAZoo_HiC_assembly Primary Assembly

    Genomic

    1. NC_066380.1 Reference CAtr_DNAZoo_HiC_assembly Primary Assembly

      Range
      11114841..11148009
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_035564617.1 → XP_035420510.1  glutamate receptor ionotropic, NMDA 1 isoform X2

      Related
      ENSACYP00000017019.1, ENSACYT00000018557.1
      Conserved Domains (3) summary
      cd13719
      Location:416 → 818
      PBP2_iGluR_NMDA_Nr1; The ligand-binding domain of the NR1 subunit of ionotropic NMDA (N-methyl-D-aspartate) glutamate receptors, a member of the type 2 periplasmic binding fold protein superfamily
      cd06379
      Location:25 → 404
      PBP1_iGluR_NMDA_NR1; N-terminal leucine-isoleucine-valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor
      pfam10562
      Location:854 → 882
      CaM_bdg_C0; Calmodulin-binding domain C0 of NMDA receptor NR1 subunit

    2. XM_035564618.1 → XP_035420511.1  glutamate receptor ionotropic, NMDA 1 isoform X3

      Conserved Domains (3) summary
      cd13719
      Location:395 → 797
      PBP2_iGluR_NMDA_Nr1; The ligand-binding domain of the NR1 subunit of ionotropic NMDA (N-methyl-D-aspartate) glutamate receptors, a member of the type 2 periplasmic binding fold protein superfamily
      cd06379
      Location:25 → 383
      PBP1_iGluR_NMDA_NR1; N-terminal leucine-isoleucine-valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor
      pfam10562
      Location:833 → 861
      CaM_bdg_C0; Calmodulin-binding domain C0 of NMDA receptor NR1 subunit

    3. XM_035564620.1 → XP_035420513.1  glutamate receptor ionotropic, NMDA 1 isoform X4

      Conserved Domains (3) summary
      cd13719
      Location:395 → 797
      PBP2_iGluR_NMDA_Nr1; The ligand-binding domain of the NR1 subunit of ionotropic NMDA (N-methyl-D-aspartate) glutamate receptors, a member of the type 2 periplasmic binding fold protein superfamily
      cd06379
      Location:25 → 383
      PBP1_iGluR_NMDA_NR1; N-terminal leucine-isoleucine-valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor
      pfam10562
      Location:833 → 861
      CaM_bdg_C0; Calmodulin-binding domain C0 of NMDA receptor NR1 subunit

    4. XM_035564616.1 → XP_035420509.1  glutamate receptor ionotropic, NMDA 1 isoform X1

      Related
      ENSACYP00000016957.1, ENSACYT00000018481.1
      Conserved Domains (3) summary
      cd13719
      Location:395 → 797
      PBP2_iGluR_NMDA_Nr1; The ligand-binding domain of the NR1 subunit of ionotropic NMDA (N-methyl-D-aspartate) glutamate receptors, a member of the type 2 periplasmic binding fold protein superfamily
      cd06379
      Location:25 → 383
      PBP1_iGluR_NMDA_NR1; N-terminal leucine-isoleucine-valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor
      pfam10562
      Location:833 → 861
      CaM_bdg_C0; Calmodulin-binding domain C0 of NMDA receptor NR1 subunit
    Nucleotide Protein
    Heading Accession and Version

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