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    LOC118823114 epidermal differentiation-specific protein-like [ Colossoma macropomum (tambaqui) ]

    Gene ID: 118823114, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC118823114
    Gene description
    epidermal differentiation-specific protein-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Colossoma macropomum
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Characiformes; Characoidei; Colossoma
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    Genomic context

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    See LOC118823114 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    100 current Colossoma_macropomum (GCF_904425465.1) Unplaced Scaffold NW_023494802.1 (38077931..38078935)

    NW_023494802.1Genomic Context describing neighboring genes Neighboring gene epidermal differentiation-specific protein-like Neighboring gene epidermal differentiation-specific protein-like Neighboring gene epidermal differentiation-specific protein-like Neighboring gene epidermal differentiation-specific protein-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_023494802 Unplaced Scaffold Reference Colossoma_macropomum

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables structural constituent of eye lens IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in lens development in camera-type eye IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in visual perception IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    epidermal differentiation-specific protein-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Colossoma macropomum Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Colossoma_macropomum

    Genomic

    1. NW_023494802.1 Reference Colossoma_macropomum

      Range
      38077931..38078935
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036592517.1 → XP_036448410.1  epidermal differentiation-specific protein-like

      Conserved Domains (3) summary
      smart00247
      Location:88 → 166
      XTALbg; Beta/gamma crystallins
      cd20230
      Location:188 → 333
      PFM_EP37-like; pore-forming module of Cynops pyrrhogaster EP37, and similar aerolysin-type beta-barrel pore-forming proteins
      pfam00030
      Location:3 → 80
      Crystall; Beta/Gamma crystallin
    Nucleotide Protein
    Heading Accession and Version

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