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    LOC110491132 prickle-like protein 2 [ Oncorhynchus mykiss (rainbow trout) ]

    Gene ID: 110491132, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC110491132
    Gene description
    prickle-like protein 2
    See related
    Ensembl:ENSOMYG00000034488
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oncorhynchus mykiss
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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    Genomic context

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    See LOC110491132 in Genome Data Viewer
    Location:
    chromosome: 16
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    101 current USDA_OmykA_1.1 (GCF_013265735.2) 16 NC_048580.1 (59983280..60049509, complement)
    100 previous assembly Omyk_1.0 (GCF_002163495.1) 16 NC_035092.1 (56777523..56835681, complement)

    Chromosome 16 - NC_048580.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110492462 Neighboring gene uncharacterized LOC110492463 Neighboring gene uncharacterized LOC110492464 Neighboring gene rhodopsin

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    prickle-like protein 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference USDA_OmykA_1.1 Primary Assembly

    Genomic

    1. NC_048580.1 Reference USDA_OmykA_1.1 Primary Assembly

      Range
      59983280..60049509 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036947459.1 → XP_036803354.1  prickle-like protein 2

      UniProtKB/TrEMBL
      A0A8C7T2P5, A0A8C7W550
      Conserved Domains (4) summary
      cd09415
      Location:126 → 184
      LIM1_Prickle; The first LIM domain of Prickle
      cd09418
      Location:189 → 244
      LIM2_Prickle; The second LIM domain of Prickle
      cd09420
      Location:249 → 307
      LIM3_Prickle; The third LIM domain of Prickle
      cd09827
      Location:22 → 118
      PET_Prickle; The PET domain of Prickle

    2. XM_036947457.1 → XP_036803352.1  prickle-like protein 2

      UniProtKB/TrEMBL
      A0A8C7T2P5, A0A8C7W550
      Related
      ENSOMYP00000074586.2, ENSOMYT00000081209.2
      Conserved Domains (4) summary
      cd09415
      Location:126 → 184
      LIM1_Prickle; The first LIM domain of Prickle
      cd09418
      Location:189 → 244
      LIM2_Prickle; The second LIM domain of Prickle
      cd09420
      Location:249 → 307
      LIM3_Prickle; The third LIM domain of Prickle
      cd09827
      Location:22 → 118
      PET_Prickle; The PET domain of Prickle
    Nucleotide Protein
    Heading Accession and Version

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