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    Atpalpha sodium/potassium-transporting ATPase subunit alpha [ Rhipicephalus microplus (southern cattle tick) ]

    Gene ID: 119172146, updated on 3-Jul-2024

    Summary

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    Gene symbol
    Atpalpha
    Gene description
    sodium/potassium-transporting ATPase subunit alpha
    See related
    VectorBase:LOC119172146; EnsemblRapid:LOC119172146
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Rhipicephalus microplus
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Chelicerata; Arachnida; Acari; Parasitiformes; Ixodida; Ixodoidea; Ixodidae; Rhipicephalinae; Rhipicephalus; Boophilus
    Orthologs
    fruit fly all
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    Genomic context

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    See Atpalpha in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    23
    Annotation release Status Assembly Chr Location
    100 current ASM1333972v1 (GCF_013339725.1) 6 NC_051170.1 (64678354..64846435, complement)

    Chromosome 6 - NC_051170.1Genomic Context describing neighboring genes Neighboring gene helix-loop-helix protein 2-like Neighboring gene circumsporozoite protein-like Neighboring gene uncharacterized LOC119172148 Neighboring gene interferon alpha-inducible protein 27-like protein 2B Neighboring gene peroxisomal biogenesis factor 3-like Neighboring gene uncharacterized LOC119172151

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_051170.1 Chromosome 6 Reference ASM1333972v1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Prediction of G protein-coupled receptor encoding sequences from the synganglion transcriptome of the cattle tick, Rhipicephalus microplus. Guerrero FD, et al. Ticks Tick Borne Dis, 2016 Jul. PMID 26922323, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables P-type sodium:potassium-exchanging transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in intracellular potassium ion homeostasis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in intracellular sodium ion homeostasis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in potassium ion import across plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in proton transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in sodium ion export across plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    sodium/potassium-transporting ATPase subunit alpha-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Rhipicephalus microplus Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM1333972v1 Primary Assembly

    Genomic

    1. NC_051170.1 Reference ASM1333972v1 Primary Assembly

      Range
      64678354..64846435 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_037423158.1 → XP_037279055.1  sodium/potassium-transporting ATPase subunit alpha-like isoform X1

      UniProtKB/TrEMBL
      A0A6G5AC67
      Related
      XP_037279055.1, XM_037423158.1
      Conserved Domains (1) summary
      cd02608
      Location:80 → 1038
      P-type_ATPase_Na-K_like; alpha-subunit of Na(+)/K(+)-ATPases and of gastric H(+)/K(+)-ATPase, similar to the human Na(+)/K(+)-ATPase alpha subunits 1-4

    2. XM_037423161.1 → XP_037279058.1  sodium/potassium-transporting ATPase subunit alpha-like isoform X4

      UniProtKB/TrEMBL
      A0A6G5AC67
      Related
      XP_037279058.1, XM_037423161.1
      Conserved Domains (1) summary
      cd02608
      Location:73 → 1031
      P-type_ATPase_Na-K_like; alpha-subunit of Na(+)/K(+)-ATPases and of gastric H(+)/K(+)-ATPase, similar to the human Na(+)/K(+)-ATPase alpha subunits 1-4

    3. XM_037423160.1 → XP_037279057.1  sodium/potassium-transporting ATPase subunit alpha-like isoform X3

      UniProtKB/TrEMBL
      A0A6G5AC67
      Related
      XP_037279057.1, XM_037423160.1
      Conserved Domains (1) summary
      cd02608
      Location:76 → 1034
      P-type_ATPase_Na-K_like; alpha-subunit of Na(+)/K(+)-ATPases and of gastric H(+)/K(+)-ATPase, similar to the human Na(+)/K(+)-ATPase alpha subunits 1-4

    4. XM_037423159.1 → XP_037279056.1  sodium/potassium-transporting ATPase subunit alpha-like isoform X2

      UniProtKB/TrEMBL
      A0A6G5AC67
      Related
      XP_037279056.1, XM_037423159.1
      Conserved Domains (1) summary
      cd02608
      Location:76 → 1034
      P-type_ATPase_Na-K_like; alpha-subunit of Na(+)/K(+)-ATPases and of gastric H(+)/K(+)-ATPase, similar to the human Na(+)/K(+)-ATPase alpha subunits 1-4

    5. XM_037423162.1 → XP_037279059.1  sodium/potassium-transporting ATPase subunit alpha-like isoform X5

      UniProtKB/TrEMBL
      A0A6G5AC67
      Related
      XP_037279059.1, XM_037423162.1
      Conserved Domains (1) summary
      TIGR01106
      Location:46 → 866
      ATPase-IIC_X-K; sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit
    Nucleotide Protein
    Heading Accession and Version

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