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    LOC120061359 prickle-like protein 2 [ Salvelinus namaycush (lake trout) ]

    Gene ID: 120061359, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC120061359
    Gene description
    prickle-like protein 2
    See related
    EnsemblRapid:ENSSNMG00000042074
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Salvelinus namaycush
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salvelinus
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    Genomic context

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    See LOC120061359 in Genome Data Viewer
    Location:
    chromosome: 16
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    100 current SaNama_1.0 (GCF_016432855.1) 16 NC_052322.1 (36683286..36698993)

    Chromosome 16 - NC_052322.1Genomic Context describing neighboring genes Neighboring gene membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1-like Neighboring gene rhodopsin Neighboring gene periphilin-1-like Neighboring gene uncharacterized LOC120061393

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_052322.1 Chromosome 16 Reference SaNama_1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    prickle-like protein 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Salvelinus namaycush Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference SaNama_1.0 Primary Assembly

    Genomic

    1. NC_052322.1 Reference SaNama_1.0 Primary Assembly

      Range
      36683286..36698993
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039011122.1 → XP_038867050.1  prickle-like protein 2

      UniProtKB/TrEMBL
      A0A8U1EZP9
      Related
      ENSSNMP00000061717.1, ENSSNMT00000067064.1
      Conserved Domains (4) summary
      cd09415
      Location:126 → 184
      LIM1_Prickle; The first LIM domain of Prickle
      cd09418
      Location:189 → 244
      LIM2_Prickle; The second LIM domain of Prickle
      cd09420
      Location:249 → 307
      LIM3_Prickle; The third LIM domain of Prickle
      cd09827
      Location:22 → 118
      PET_Prickle; The PET domain of Prickle
    Nucleotide Protein
    Heading Accession and Version

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