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    Tex46 testis expressed 46 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 102552669, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Tex46provided by RGD
    Official Full Name
    testis expressed 46provided by RGD
    Primary source
    RGD:7515741
    See related
    EnsemblRapid:ENSRNOG00000022257 AllianceGenome:RGD:7515741
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1311870
    Summary
    Predicted to be located in membrane. Orthologous to human TEX46 (testis expressed 46). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Restricted expression toward (RPKM 140.8) See more
    Orthologs
    human mouse all
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    Genomic context

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    See Tex46 in Genome Data Viewer
    Location:
    5q36
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 5 NC_086023.1 (154132763..154137196)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 5 NC_051340.1 (148849307..148853742)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 5 NC_005104.4 (154976211..154980671)

    Chromosome 5 - NC_086023.1Genomic Context describing neighboring genes Neighboring gene aminoacyl tRNA synthase complex-interacting multifunctional protein 1-like Neighboring gene leucine zipper protein 1 Neighboring gene lysine demethylase 1A Neighboring gene uncharacterized LOC120103012 Neighboring gene lactamase beta like 1 Neighboring gene Eph receptor B2 Neighboring gene uncharacterized LOC134487018

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RGD

    Process Evidence Code Pubs
    involved_in single fertilization IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    testis-expressed protein 46
    Names
    uncharacterized protein C1orf234 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001399372.1 → NP_001386301.1  testis-expressed protein 46

      Status: VALIDATED

      Source sequence(s)
      MK364794
      UniProtKB/TrEMBL
      A0A6B9RWJ8, D4A3Q6
      Related
      ENSRNOP00000035645.6, ENSRNOT00000029077.9
      Conserved Domains (1) summary
      pfam17671
      Location:11 → 156
      DUF5531; Family of unknown function (DUF5531)

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086023.1 Reference GRCr8

      Range
      154132763..154137196
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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