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    LOC118370709 prickle-like protein 2 [ Oncorhynchus keta (chum salmon) ]

    Gene ID: 118370709, updated on 23-Nov-2023

    Summary

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    Gene symbol
    LOC118370709
    Gene description
    prickle-like protein 2
    See related
    EnsemblRapid:ENSOKEG00005054391
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oncorhynchus keta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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    Genomic context

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    See LOC118370709 in Genome Data Viewer
    Location:
    chromosome: 27
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2023_03 current Oket_V2 (GCF_023373465.1) 27 NC_068447.1 (22237976..22294967)

    Chromosome 27 - NC_068447.1Genomic Context describing neighboring genes Neighboring gene membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1-like Neighboring gene uncharacterized LOC127912487 Neighboring gene rhodopsin Neighboring gene periphilin-1-like Neighboring gene receptor-type tyrosine-protein phosphatase V-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_068447.1 Chromosome 27 Reference Oket_V2 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    prickle-like protein 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_023373465.1-RS_2023_03

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Oket_V2 Primary Assembly

    Genomic

    1. NC_068447.1 Reference Oket_V2 Primary Assembly

      Range
      22237976..22294967
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_035755796.2 → XP_035611689.1  prickle-like protein 2

      Related
      ENSOKEP00005100586.1, ENSOKET00005120519.1
      Conserved Domains (4) summary
      cd09415
      Location:126 → 184
      LIM1_Prickle; The first LIM domain of Prickle
      cd09418
      Location:189 → 244
      LIM2_Prickle; The second LIM domain of Prickle
      cd09420
      Location:249 → 307
      LIM3_Prickle; The third LIM domain of Prickle
      cd09827
      Location:22 → 118
      PET_Prickle; The PET domain of Prickle

    2. XM_035755797.2 → XP_035611690.1  prickle-like protein 2

      Conserved Domains (4) summary
      cd09415
      Location:126 → 184
      LIM1_Prickle; The first LIM domain of Prickle
      cd09418
      Location:189 → 244
      LIM2_Prickle; The second LIM domain of Prickle
      cd09420
      Location:249 → 307
      LIM3_Prickle; The third LIM domain of Prickle
      cd09827
      Location:22 → 118
      PET_Prickle; The PET domain of Prickle

    3. XM_052481929.1 → XP_052337889.1  prickle-like protein 2

    4. XM_052481930.1 → XP_052337890.1  prickle-like protein 2

    5. XM_052481931.1 → XP_052337891.1  prickle-like protein 2

    Nucleotide Protein Strain
    Heading Accession and Version

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