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    Fam163a family with sequence similarity 163, member A [ Rattus norvegicus (Norway rat) ]

    Gene ID: 498257, updated on 9-Dec-2024

    Summary

    Official Symbol
    Fam163aprovided by RGD
    Official Full Name
    family with sequence similarity 163, member Aprovided by RGD
    Primary source
    RGD:1565760
    See related
    EnsemblRapid:ENSRNOG00000024825 AllianceGenome:RGD:1565760
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1565760
    Summary
    Predicted to be located in membrane. Orthologous to human FAM163A (family with sequence similarity 163 member A). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Adrenal (RPKM 51.5), Brain (RPKM 28.8) and 3 other tissues See more
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    Genomic context

    See Fam163a in Genome Data Viewer
    Location:
    13q22
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 13 NC_086031.1 (70813129..70891410, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 13 NC_051348.1 (68262867..68341323, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 13 NC_005112.4 (73741674..73820114, complement)

    Chromosome 13 - NC_086031.1Genomic Context describing neighboring genes Neighboring gene interferon induced transmembrane protein 2, pseudogene 2 Neighboring gene torsin 1A interacting protein 1 Neighboring gene torsin 1A interacting protein 2 Neighboring gene uncharacterized LOC120096289 Neighboring gene ATP synthase F1 subunit gamma, pseudogene 3 Neighboring gene eukaryotic translation elongation factor 1 alpha 1, pseudogene 15

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001109072.1NP_001102542.1  protein FAM163A

      See identical proteins and their annotated locations for NP_001102542.1

      Status: PROVISIONAL

      Source sequence(s)
      CH473958
      UniProtKB/TrEMBL
      A6ID04, D3ZIK4
      Related
      ENSRNOP00000037775.3, ENSRNOT00000036392.7
      Conserved Domains (1) summary
      pfam15069
      Location:1167
      FAM163; FAM163 family

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086031.1 Reference GRCr8

      Range
      70813129..70891410 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039090971.2XP_038946899.1  protein FAM163A isoform X1

      UniProtKB/TrEMBL
      A6ID04, D3ZIK4
      Conserved Domains (1) summary
      pfam15069
      Location:1167
      FAM163; FAM163 family
    2. XM_039090967.2XP_038946895.1  protein FAM163A isoform X1

      UniProtKB/TrEMBL
      A6ID04, D3ZIK4
      Conserved Domains (1) summary
      pfam15069
      Location:1167
      FAM163; FAM163 family
    3. XM_008769671.4XP_008767893.1  protein FAM163A isoform X1

      See identical proteins and their annotated locations for XP_008767893.1

      UniProtKB/TrEMBL
      A6ID04, D3ZIK4
      Conserved Domains (1) summary
      pfam15069
      Location:1167
      FAM163; FAM163 family
    4. XM_039090968.2XP_038946896.1  protein FAM163A isoform X1

      UniProtKB/TrEMBL
      A6ID04, D3ZIK4
      Conserved Domains (1) summary
      pfam15069
      Location:1167
      FAM163; FAM163 family
    5. XM_008769669.4XP_008767891.1  protein FAM163A isoform X1

      See identical proteins and their annotated locations for XP_008767891.1

      UniProtKB/TrEMBL
      A6ID04, D3ZIK4
      Conserved Domains (1) summary
      pfam15069
      Location:1167
      FAM163; FAM163 family
    6. XM_008769670.4XP_008767892.1  protein FAM163A isoform X1

      See identical proteins and their annotated locations for XP_008767892.1

      UniProtKB/TrEMBL
      A6ID04, D3ZIK4
      Conserved Domains (1) summary
      pfam15069
      Location:1167
      FAM163; FAM163 family
    7. XM_008769668.4XP_008767890.1  protein FAM163A isoform X1

      See identical proteins and their annotated locations for XP_008767890.1

      UniProtKB/TrEMBL
      A6ID04, D3ZIK4
      Conserved Domains (1) summary
      pfam15069
      Location:1167
      FAM163; FAM163 family
    8. XM_063272541.1XP_063128611.1  protein FAM163A isoform X1

      UniProtKB/TrEMBL
      A6ID04, D3ZIK4
    9. XM_063272540.1XP_063128610.1  protein FAM163A isoform X1

      UniProtKB/TrEMBL
      A6ID04, D3ZIK4