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    Garin2 golgi associated RAB2 interactor family member 2 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 366671, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Garin2provided by RGD
    Official Full Name
    golgi associated RAB2 interactor family member 2provided by RGD
    Primary source
    RGD:1564393
    See related
    EnsemblRapid:ENSRNOG00000028351 AllianceGenome:RGD:1564393
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Fam71d
    Summary
    Predicted to be involved in flagellated sperm motility. Predicted to be located in sperm midpiece. Orthologous to human GARIN2 (golgi associated RAB2 interactor family member 2). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Restricted expression toward (RPKM 317.0) See more
    Orthologs
    human mouse all
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    Genomic context

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    See Garin2 in Genome Data Viewer
    Location:
    6q24
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 6 NC_086024.1 (103223142..103267822)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 6 NC_051341.1 (97489562..97534729)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 6 NC_005105.4 (101864567..101910312)

    Chromosome 6 - NC_086024.1Genomic Context describing neighboring genes Neighboring gene E3 ubiquitin-protein ligase RNF138-like Neighboring gene gephyrin Neighboring gene ephrin type-A receptor 7-like Neighboring gene chromobox 1, pseudogene 2 Neighboring gene uncharacterized LOC100909680 Neighboring gene U6 snRNA-associated Sm-like protein LSm8 pseudogene Neighboring gene protein associated with LIN7 1, MAGUK p55 family member Neighboring gene ATPase H+ transporting V1 subunit D

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RGD

    Process Evidence Code Pubs
    involved_in flagellated sperm motility ISO
    Inferred from Sequence Orthology
    more info
    		  
    Component Evidence Code Pubs
    located_in sperm midpiece ISO
    Inferred from Sequence Orthology
    more info
    		  

    General protein information

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    Preferred Names
    Golgi-associated RAB2 interactor protein 2
    Names
    family with sequence similarity 71, member D

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001017469.2 → NP_001017469.2  Golgi-associated RAB2 interactor protein 2 isoform 1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000006
      UniProtKB/TrEMBL
      Q6AYN1
      Related
      ENSRNOP00000030883.2, ENSRNOT00000029888.4

    2. NM_001434046.1 → NP_001420975.1  Golgi-associated RAB2 interactor protein 2 isoform 2

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000006
      UniProtKB/TrEMBL
      A6HCE4

    3. NM_001434048.1 → NP_001420977.1  Golgi-associated RAB2 interactor protein 2 isoform 3

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000006
      UniProtKB/TrEMBL
      A6HCE0

    4. NM_001434049.1 → NP_001420978.1  Golgi-associated RAB2 interactor protein 2 isoform 4

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000006
      UniProtKB/TrEMBL
      A6HCE0

    5. NM_001434050.1 → NP_001420979.1  Golgi-associated RAB2 interactor protein 2 isoform 4

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000006
      UniProtKB/TrEMBL
      A6HCE0

    6. NM_001434051.1 → NP_001420980.1  Golgi-associated RAB2 interactor protein 2 isoform 4

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000006
      UniProtKB/TrEMBL
      A6HCE0

    7. NM_001434056.1 → NP_001420985.1  Golgi-associated RAB2 interactor protein 2 isoform 5

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000006
      UniProtKB/TrEMBL
      A6HCE0

    8. NM_001434059.1 → NP_001420988.1  Golgi-associated RAB2 interactor protein 2 isoform 5

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000006
      UniProtKB/TrEMBL
      A6HCE0

    9. NM_001434060.1 → NP_001420989.1  Golgi-associated RAB2 interactor protein 2 isoform 6

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000006
      UniProtKB/TrEMBL
      A6HCE0

    10. NM_001434061.1 → NP_001420990.1  Golgi-associated RAB2 interactor protein 2 isoform 7

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000006
      UniProtKB/TrEMBL
      A6HCE4

    11. NM_001434062.1 → NP_001420991.1  Golgi-associated RAB2 interactor protein 2 isoform 8

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000006
      UniProtKB/TrEMBL
      A6HCE4

    12. NM_001434063.1 → NP_001420992.1  Golgi-associated RAB2 interactor protein 2 isoform 8

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000006
      UniProtKB/TrEMBL
      A6HCE4

    13. NM_001434064.1 → NP_001420993.1  Golgi-associated RAB2 interactor protein 2 isoform 8

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000006
      UniProtKB/TrEMBL
      A6HCE4

    14. NM_001434065.1 → NP_001420994.1  Golgi-associated RAB2 interactor protein 2 isoform 8

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000006
      UniProtKB/TrEMBL
      A6HCE4

    15. NM_001434066.1 → NP_001420995.1  Golgi-associated RAB2 interactor protein 2 isoform 8

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000006
      UniProtKB/TrEMBL
      A6HCE4

    16. NM_001434067.1 → NP_001420996.1  Golgi-associated RAB2 interactor protein 2 isoform 9

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000006

    17. NM_001434068.1 → NP_001420997.1  Golgi-associated RAB2 interactor protein 2 isoform 10

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000006

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086024.1 Reference GRCr8

      Range
      103223142..103267822
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017594259.3 → XP_017449748.1  Golgi-associated RAB2 interactor protein 2 isoform X7

      Conserved Domains (1) summary
      pfam12480
      Location:116 → 186
      DUF3699; Protein of unknown function (DUF3699)

    2. XM_063262204.1 → XP_063118274.1  Golgi-associated RAB2 interactor protein 2 isoform X4

    3. XM_063262212.1 → XP_063118282.1  Golgi-associated RAB2 interactor protein 2 isoform X7

    4. XM_017594255.3 → XP_017449744.1  Golgi-associated RAB2 interactor protein 2 isoform X4

      Related
      ENSRNOP00000088945.2, ENSRNOT00000098828.2

    5. XM_063262205.1 → XP_063118275.1  Golgi-associated RAB2 interactor protein 2 isoform X4

      UniProtKB/TrEMBL
      A0A8I5ZVQ0, A6HCE0

    6. XM_063262214.1 → XP_063118284.1  Golgi-associated RAB2 interactor protein 2 isoform X7

      UniProtKB/TrEMBL
      A0A8I6GHM2, A6HCE1, A6HCE4

    7. XM_063262206.1 → XP_063118276.1  Golgi-associated RAB2 interactor protein 2 isoform X4

      UniProtKB/TrEMBL
      A0A8I5ZVQ0, A6HCE0

    8. XM_063262213.1 → XP_063118283.1  Golgi-associated RAB2 interactor protein 2 isoform X7

    9. XM_063262208.1 → XP_063118278.1  Golgi-associated RAB2 interactor protein 2 isoform X5

      UniProtKB/TrEMBL
      A6HCE0

    10. XM_017594257.3 → XP_017449746.1  Golgi-associated RAB2 interactor protein 2 isoform X5

    11. XM_017594254.3 → XP_017449743.1  Golgi-associated RAB2 interactor protein 2 isoform X2

      Related
      ENSRNOP00000111374.1, ENSRNOT00000161205.1

    12. XM_063262195.1 → XP_063118265.1  Golgi-associated RAB2 interactor protein 2 isoform X2

      UniProtKB/TrEMBL
      A6HCE4

    13. XM_063262199.1 → XP_063118269.1  Golgi-associated RAB2 interactor protein 2 isoform X3

      Related
      ENSRNOP00000112689.1, ENSRNOT00000149699.1

    14. XM_063262211.1 → XP_063118281.1  Golgi-associated RAB2 interactor protein 2 isoform X6

    15. XM_039112639.2 → XP_038968567.1  Golgi-associated RAB2 interactor protein 2 isoform X3

      Conserved Domains (1) summary
      pfam12480
      Location:116 → 186
      DUF3699; Protein of unknown function (DUF3699)

    16. XM_017594258.3 → XP_017449747.1  Golgi-associated RAB2 interactor protein 2 isoform X6

      UniProtKB/TrEMBL
      A6HCE4
      Related
      ENSRNOP00000103730.1, ENSRNOT00000172084.1

    17. XM_063262201.1 → XP_063118271.1  Golgi-associated RAB2 interactor protein 2 isoform X3

    18. XM_063262189.1 → XP_063118259.1  Golgi-associated RAB2 interactor protein 2 isoform X1

      UniProtKB/TrEMBL
      A6HCE0
      Related
      ENSRNOP00000107809.1, ENSRNOT00000169901.1

    19. XM_017594253.3 → XP_017449742.1  Golgi-associated RAB2 interactor protein 2 isoform X1

    20. XM_063262218.1 → XP_063118288.1  Golgi-associated RAB2 interactor protein 2 isoform X8

    21. XM_063262221.1 → XP_063118291.1  Golgi-associated RAB2 interactor protein 2 isoform X10

    22. XM_063262191.1 → XP_063118261.1  Golgi-associated RAB2 interactor protein 2 isoform X1

      UniProtKB/TrEMBL
      A6HCE0

    23. XM_063262190.1 → XP_063118260.1  Golgi-associated RAB2 interactor protein 2 isoform X1

      UniProtKB/TrEMBL
      A6HCE0

    24. XM_063262219.1 → XP_063118289.1  Golgi-associated RAB2 interactor protein 2 isoform X8

    25. XM_063262220.1 → XP_063118290.1  Golgi-associated RAB2 interactor protein 2 isoform X9

    26. XM_063262207.1 → XP_063118277.1  Golgi-associated RAB2 interactor protein 2 isoform X4

      UniProtKB/TrEMBL
      A0A8I5ZVQ0, A6HCE0

    27. XM_063262187.1 → XP_063118257.1  Golgi-associated RAB2 interactor protein 2 isoform X2

      UniProtKB/TrEMBL
      A6HCE4

    28. XM_063262200.1 → XP_063118270.1  Golgi-associated RAB2 interactor protein 2 isoform X3

      UniProtKB/TrEMBL
      A6HCE0, A6HCE2

    29. XM_063262192.1 → XP_063118262.1  Golgi-associated RAB2 interactor protein 2 isoform X1

      UniProtKB/TrEMBL
      A6HCE0

    30. XM_063262186.1 → XP_063118256.1  Golgi-associated RAB2 interactor protein 2 isoform X1

      UniProtKB/TrEMBL
      A6HCE0

    31. XM_063262193.1 → XP_063118263.1  Golgi-associated RAB2 interactor protein 2 isoform X1

      UniProtKB/TrEMBL
      A6HCE0

    32. XM_063262215.1 → XP_063118285.1  Golgi-associated RAB2 interactor protein 2 isoform X7

      UniProtKB/TrEMBL
      A0A8I6GHM2, A6HCE1, A6HCE4
      Related
      ENSRNOP00000110801.1, ENSRNOT00000171111.1

    33. XM_063262202.1 → XP_063118272.1  Golgi-associated RAB2 interactor protein 2 isoform X4

      UniProtKB/TrEMBL
      A0A8I5ZVQ0, A6HCE0
      Related
      ENSRNOP00000083630.1, ENSRNOT00000116129.2

    34. XM_063262209.1 → XP_063118279.1  Golgi-associated RAB2 interactor protein 2 isoform X7

    35. XM_063262216.1 → XP_063118286.1  Golgi-associated RAB2 interactor protein 2 isoform X7

      UniProtKB/TrEMBL
      A0A8I6GHM2, A6HCE1, A6HCE4

    36. XM_063262197.1 → XP_063118267.1  Golgi-associated RAB2 interactor protein 2 isoform X3

      UniProtKB/TrEMBL
      A6HCE0, A6HCE2

    37. XM_063262196.1 → XP_063118266.1  Golgi-associated RAB2 interactor protein 2 isoform X1

      UniProtKB/TrEMBL
      A6HCE0

    38. XM_063262194.1 → XP_063118264.1  Golgi-associated RAB2 interactor protein 2 isoform X1

      UniProtKB/TrEMBL
      A6HCE0

    39. XM_063262198.1 → XP_063118268.1  Golgi-associated RAB2 interactor protein 2 isoform X3

      UniProtKB/TrEMBL
      A6HCE0, A6HCE2

    40. XM_063262188.1 → XP_063118258.1  Golgi-associated RAB2 interactor protein 2 isoform X1

      UniProtKB/TrEMBL
      A6HCE0

    41. XM_063262203.1 → XP_063118273.1  Golgi-associated RAB2 interactor protein 2 isoform X4

      UniProtKB/TrEMBL
      A0A8I5ZVQ0, A6HCE0

    42. XM_063262217.1 → XP_063118287.1  Golgi-associated RAB2 interactor protein 2 isoform X7

      UniProtKB/TrEMBL
      A0A8I6GHM2, A6HCE1, A6HCE4

    43. XM_063262210.1 → XP_063118280.1  Golgi-associated RAB2 interactor protein 2 isoform X7

    44. XM_063262222.1 → XP_063118292.1  Golgi-associated RAB2 interactor protein 2 isoform X11

    Nucleotide Protein Strain
    Heading Accession and Version

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