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    Spats1 spermatogenesis associated, serine-rich 1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 301255, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Spats1provided by RGD
    Official Full Name
    spermatogenesis associated, serine-rich 1provided by RGD
    Primary source
    RGD:631367
    See related
    EnsemblRapid:ENSRNOG00000019963 AllianceGenome:RGD:631367
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Srsp1
    Summary
    Orthologous to human SPATS1 (spermatogenesis associated serine rich 1). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Thymus (RPKM 31.8), Testes (RPKM 29.9) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Spats1 in Genome Data Viewer
    Location:
    9q12
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 9 NC_086027.1 (23024129..23059734)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 9 NC_051344.1 (15527179..15562286)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 9 NC_005108.4 (17911950..17947101)

    Chromosome 9 - NC_086027.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 151B Neighboring gene t-complex-associated testis expressed 1 Neighboring gene uncharacterized LOC108351892 Neighboring gene alanyl-tRNA synthetase 2, mitochondrial Neighboring gene cell division cycle 5-like Neighboring gene uncharacterized LOC108351893 Neighboring gene tetra-peptide repeat homeobox-like protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Spats 1 (Srsp1) is differentially expressed during testis development of the rat. Capoano CA, et al. Gene Expr Patterns, 2010 Jan. PMID 19948251
    2. Identification and characterization of SRSP1, a rat gene differentially expressed during spermatogenesis and coding for a serine stretch-containing protein. Geisinger A, et al. Cytogenet Genome Res, 2002. PMID 12826748
    3. Characterization of the piRNA complex from rat testes. Lau NC, et al. Science, 2006 Jul 21. PMID 16778019

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Spats1 plays a role in the initiation of the first spermatogenic wave, and in the establishment or progression of the first male meiotic division.
      Title: Spats 1 (Srsp1) is differentially expressed during testis development of the rat.
    2. The full length ORF encodes a putative phosphoprotein containing a serine stretch and a bipartite nuclear localization signal, which we call Srsp1 ("serin-rich spermatogenic protein 1").
      Title: Identification and characterization of SRSP1, a rat gene differentially expressed during spermatogenesis and coding for a serine stretch-containing protein.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    General protein information

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    Preferred Names
    spermatogenesis-associated serine-rich protein 1
    Names
    spermatogenic serine-rich protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_181376.3 → NP_852041.2  spermatogenesis-associated serine-rich protein 1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000009
      UniProtKB/Swiss-Prot
      Q811V6
      UniProtKB/TrEMBL
      F1LSS6
      Related
      ENSRNOP00000038995.5, ENSRNOT00000045763.6
      Conserved Domains (1) summary
      pfam15160
      Location:10 → 264
      SASRP1; Spermatogenesis-associated serine-rich protein 1

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086027.1 Reference GRCr8

      Range
      23024129..23059734
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063266857.1 → XP_063122927.1  spermatogenesis-associated serine-rich protein 1 isoform X6

    2. XM_063266860.1 → XP_063122930.1  spermatogenesis-associated serine-rich protein 1 isoform X9

      UniProtKB/TrEMBL
      A6JJ00

    3. XM_063266859.1 → XP_063122929.1  spermatogenesis-associated serine-rich protein 1 isoform X8

    4. XM_063266855.1 → XP_063122925.1  spermatogenesis-associated serine-rich protein 1 isoform X5

    5. XM_063266851.1 → XP_063122921.1  spermatogenesis-associated serine-rich protein 1 isoform X1

      UniProtKB/Swiss-Prot
      Q811V6
      Related
      ENSRNOP00000105654.1, ENSRNOT00000161580.1

    6. XM_063266856.1 → XP_063122926.1  spermatogenesis-associated serine-rich protein 1 isoform X5

    7. XM_063266858.1 → XP_063122928.1  spermatogenesis-associated serine-rich protein 1 isoform X7

      UniProtKB/Swiss-Prot
      Q811V6
      Related
      ENSRNOP00000074772.3, ENSRNOT00000080940.3

    8. XM_063266853.1 → XP_063122923.1  spermatogenesis-associated serine-rich protein 1 isoform X3

      UniProtKB/Swiss-Prot
      Q811V6
      UniProtKB/TrEMBL
      A0A0G2K8X4

    9. XM_063266854.1 → XP_063122924.1  spermatogenesis-associated serine-rich protein 1 isoform X4

      UniProtKB/Swiss-Prot
      Q811V6

    10. XM_063266852.1 → XP_063122922.1  spermatogenesis-associated serine-rich protein 1 isoform X2

      UniProtKB/Swiss-Prot
      Q811V6
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q811V6.1 GenPept UniProtKB/Swiss-Prot:Q811V6

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