U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Protein

    • Showing Current items.

    BDNF brain derived neurotrophic factor [ Ochotona princeps (American pika) ]

    Gene ID: 101528222, updated on 3-Dec-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    BDNF
    Gene description
    brain derived neurotrophic factor
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Ochotona princeps
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Lagomorpha; Ochotonidae; Ochotona
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See BDNF in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2023_07 current mOchPri1.hap1 (GCF_030435755.1) 4 NC_080835.1 (31785211..31837554)
    102 previous assembly OchPri4.0 (GCF_014633375.1) 1 NC_050536.1 (81075215..81127588, complement)

    Chromosome 4 - NC_080835.1Genomic Context describing neighboring genes Neighboring gene kinesin family member 18A Neighboring gene U6atac minor spliceosomal RNA Neighboring gene uncharacterized LOC131480180 Neighboring gene protein TFG-like Neighboring gene lin-7 homolog C, crumbs cell polarity complex component

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables growth factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nerve growth factor receptor binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell surface receptor protein tyrosine kinase signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in memory IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of neuron apoptotic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in nerve development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in nerve growth factor signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in neuron projection morphogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of collateral sprouting IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of peptidyl-serine phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of neuron differentiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    brain-derived neurotrophic factor

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_030435755.1-RS_2023_07

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mOchPri1.hap1

    Genomic

    1. NC_080835.1 Reference mOchPri1.hap1

      Range
      31785211..31837554
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_004585440.2 → XP_004585497.2  brain-derived neurotrophic factor isoform X1

      UniProtKB/TrEMBL
      H9MH67

    2. XM_058663246.1 → XP_058519229.1  brain-derived neurotrophic factor isoform X2

      UniProtKB/TrEMBL
      H9MH67
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.