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    CHI4B chalcone isomerase 4B [ Glycine max (soybean) ]

    Gene ID: 778027, updated on 7-Dec-2023

    Summary

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    Gene symbol
    CHI4B
    Gene description
    chalcone isomerase 4B
    Locus tag
    GLYMA_04G222400v4
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Glycine max
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
    Also known as
    GmCHI4B
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    Genomic context

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    See CHI4B in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    104 current Glycine_max_v4.0 (GCF_000004515.6) 4 NC_016091.4 (48124130..48126084, complement)
    103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 4 NC_016091.3 (49304163..49306117, complement)

    Chromosome 4 - NC_016091.4Genomic Context describing neighboring genes Neighboring gene bZIP transcription factor 85 Neighboring gene RING-H2 finger protein ATL74 Neighboring gene uncharacterized LOC100809314 Neighboring gene U-box domain-containing protein 62

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Partial reconstruction of flavonoid and isoflavonoid biosynthesis in yeast using soybean type I and type II chalcone isomerases. Ralston L, et al. Plant Physiol, 2005 Apr. PMID 15778463, Free PMC Article
    2. Soybean chalcone isomerase: evolution of the fold, and the differential expression and localization of the gene family. Dastmalchi M, et al. Planta, 2015 Feb. PMID 25385351
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables intramolecular lyase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    chalcone isomerase 4B

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001255112.2 → NP_001242041.2  chalcone isomerase 4B

      Status: VALIDATED

      Source sequence(s)
      ACUP04001606, EV264228, FG997353
      UniProtKB/TrEMBL
      A0A0R4J387, C6T391
      Conserved Domains (1) summary
      cl03589
      Location:3 → 207
      Chalcone_3; Chalcone isomerase-like

    RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Glycine_max_v4.0 Primary Assembly

    Genomic

    1. NC_016091.4 Reference Glycine_max_v4.0 Primary Assembly

      Range
      48124130..48126084 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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