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    LOC102573243 olfactory receptor 5AR1 [ Alligator mississippiensis (American alligator) ]

    Gene ID: 102573243, updated on 23-Oct-2023

    Summary

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    Gene symbol
    LOC102573243
    Gene description
    olfactory receptor 5AR1
    Locus tag
    Y1Q_0005119
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Alligator mississippiensis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae; Alligator
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    Genomic context

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    See LOC102573243 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2023_09 current rAllMis1 (GCF_030867095.1) 2 NC_081825.1 (173443443..173444400, complement)
    102 previous assembly ASM28112v4 (GCF_000281125.3) Unplaced Scaffold NW_017712461.1 (2919959..2936525)

    Chromosome 2 - NC_081825.1Genomic Context describing neighboring genes Neighboring gene protein maestro-like Neighboring gene maestro heat-like repeat-containing protein family member 2B Neighboring gene uncharacterized LOC132248381 Neighboring gene olfactory receptor 5P60-like Neighboring gene olfactory receptor-like protein COR4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables G protein-coupled receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables odorant binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables olfactory receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in G protein-coupled receptor signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in sensory perception of smell IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    olfactory receptor 5AR1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_030867095.1-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference rAllMis1 Primary Assembly

    Genomic

    1. NC_081825.1 Reference rAllMis1 Primary Assembly

      Range
      173443443..173444400 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006263049.3 → XP_006263111.1  olfactory receptor 5AR1

      Conserved Domains (2) summary
      pfam00001
      Location:41 → 290
      7tm_1; 7 transmembrane receptor (rhodopsin family)
      cl21561
      Location:31 → 308
      7tm_4; Olfactory receptor
    Nucleotide Protein
    Heading Accession and Version

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