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    Shal potassium voltage-gated channel protein Shal [ Ceratitis capitata (Mediterranean fruit fly) ]

    Gene ID: 101460230, updated on 15-May-2024

    Summary

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    Gene symbol
    Shal
    Gene description
    potassium voltage-gated channel protein Shal
    See related
    EnsemblRapid:LOC101460230
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Ceratitis capitata
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Tephritoidea; Tephritidae; Ceratitis; Ceratitis
    Also known as
    KCNAL
    Orthologs
    fruit fly all
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    Genomic context

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    See Shal in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    103 current Ccap_2.1 (GCF_000347755.3) Unplaced Scaffold NW_019376392.1 (27416..205923)

    NW_019376392.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110119077 Neighboring gene uncharacterized LOC110119078 Neighboring gene uncharacterized LOC111591642 Neighboring gene projectin protein bent

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_019376392 Unplaced Scaffold Reference Ccap_2.1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A genomic perspective to assessing quality of mass-reared SIT flies used in Mediterranean fruit fly (Ceratitis capitata) eradication in California. Calla B, et al. BMC Genomics, 2014 Feb 5. PMID 24495485, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables A-type (transient outward) potassium channel activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in potassium ion transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein homooligomerization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of voltage-gated potassium channel complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    potassium voltage-gated channel protein Shal

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Ceratitis capitata Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Ccap_2.1 Primary Assembly

    Genomic

    1. NW_019376392.1 Reference Ccap_2.1 Primary Assembly

      Range
      27416..205923
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_012307176.2 → XP_012162566.1  potassium voltage-gated channel protein Shal isoform X1

      See identical proteins and their annotated locations for XP_012162566.1

      UniProtKB/TrEMBL
      W8C343
      Related
      XP_012162566.1, XM_012307176.2
      Conserved Domains (4) summary
      pfam11601
      Location:2 → 27
      Shal-type; Shal-type voltage-gated potassium channels, N-terminal
      pfam00520
      Location:188 → 415
      Ion_trans; Ion transport protein
      pfam02214
      Location:43 → 132
      BTB_2; BTB/POZ domain
      pfam11879
      Location:445 → 540
      DUF3399; Domain of unknown function (DUF3399)

    2. XM_020862348.1 → XP_020718007.1  potassium voltage-gated channel protein Shal isoform X1

      UniProtKB/TrEMBL
      W8C343
      Related
      XP_020718007.1, XM_020862348.1
      Conserved Domains (4) summary
      pfam11601
      Location:2 → 27
      Shal-type; Shal-type voltage-gated potassium channels, N-terminal
      pfam00520
      Location:188 → 415
      Ion_trans; Ion transport protein
      pfam02214
      Location:43 → 132
      BTB_2; BTB/POZ domain
      pfam11879
      Location:445 → 540
      DUF3399; Domain of unknown function (DUF3399)

    3. XM_020862345.1 → XP_020718004.1  potassium voltage-gated channel protein Shal isoform X1

      UniProtKB/TrEMBL
      W8C343
      Related
      XP_020718004.1, XM_020862345.1
      Conserved Domains (4) summary
      pfam11601
      Location:2 → 27
      Shal-type; Shal-type voltage-gated potassium channels, N-terminal
      pfam00520
      Location:188 → 415
      Ion_trans; Ion transport protein
      pfam02214
      Location:43 → 132
      BTB_2; BTB/POZ domain
      pfam11879
      Location:445 → 540
      DUF3399; Domain of unknown function (DUF3399)

    4. XM_012307174.2 → XP_012162564.1  potassium voltage-gated channel protein Shal isoform X1

      See identical proteins and their annotated locations for XP_012162564.1

      UniProtKB/TrEMBL
      W8C343
      Related
      XP_012162564.1, XM_012307174.2
      Conserved Domains (4) summary
      pfam11601
      Location:2 → 27
      Shal-type; Shal-type voltage-gated potassium channels, N-terminal
      pfam00520
      Location:188 → 415
      Ion_trans; Ion transport protein
      pfam02214
      Location:43 → 132
      BTB_2; BTB/POZ domain
      pfam11879
      Location:445 → 540
      DUF3399; Domain of unknown function (DUF3399)

    5. XM_012307177.2 → XP_012162567.1  potassium voltage-gated channel protein Shal isoform X1

      See identical proteins and their annotated locations for XP_012162567.1

      UniProtKB/TrEMBL
      W8C343
      Related
      XP_012162567.1, XM_012307177.2
      Conserved Domains (4) summary
      pfam11601
      Location:2 → 27
      Shal-type; Shal-type voltage-gated potassium channels, N-terminal
      pfam00520
      Location:188 → 415
      Ion_trans; Ion transport protein
      pfam02214
      Location:43 → 132
      BTB_2; BTB/POZ domain
      pfam11879
      Location:445 → 540
      DUF3399; Domain of unknown function (DUF3399)

    6. XM_012307178.2 → XP_012162568.1  potassium voltage-gated channel protein Shal isoform X1

      See identical proteins and their annotated locations for XP_012162568.1

      UniProtKB/TrEMBL
      W8C343
      Related
      XP_012162568.1, XM_012307178.2
      Conserved Domains (4) summary
      pfam11601
      Location:2 → 27
      Shal-type; Shal-type voltage-gated potassium channels, N-terminal
      pfam00520
      Location:188 → 415
      Ion_trans; Ion transport protein
      pfam02214
      Location:43 → 132
      BTB_2; BTB/POZ domain
      pfam11879
      Location:445 → 540
      DUF3399; Domain of unknown function (DUF3399)

    7. XM_012307180.2 → XP_012162570.1  potassium voltage-gated channel protein Shal isoform X3

      Related
      XP_012162570.1, XM_012307180.2
      Conserved Domains (6) summary
      smart00225
      Location:45 → 140
      BTB; Broad-Complex, Tramtrack and Bric a brac
      pfam00520
      Location:218 → 415
      Ion_trans; Ion transport protein
      pfam02214
      Location:43 → 132
      BTB_2; BTB/POZ domain
      pfam07885
      Location:331 → 411
      Ion_trans_2; Ion channel
      pfam11601
      Location:2 → 27
      Shal-type; Shal-type voltage-gated potassium channels
      pfam11879
      Location:445 → 489
      DUF3399; Domain of unknown function (DUF3399)

    8. XM_012307179.2 → XP_012162569.1  potassium voltage-gated channel protein Shal isoform X2

      Related
      XP_012162569.1, XM_012307179.2
      Conserved Domains (6) summary
      smart00225
      Location:45 → 140
      BTB; Broad-Complex, Tramtrack and Bric a brac
      pfam00520
      Location:218 → 415
      Ion_trans; Ion transport protein
      pfam02214
      Location:43 → 132
      BTB_2; BTB/POZ domain
      pfam07885
      Location:331 → 411
      Ion_trans_2; Ion channel
      pfam11601
      Location:2 → 27
      Shal-type; Shal-type voltage-gated potassium channels
      pfam11879
      Location:445 → 492
      DUF3399; Domain of unknown function (DUF3399)

    9. XM_020862346.1 → XP_020718005.1  potassium voltage-gated channel protein Shal isoform X1

      UniProtKB/TrEMBL
      W8C343
      Related
      XP_020718005.1, XM_020862346.1
      Conserved Domains (4) summary
      pfam11601
      Location:2 → 27
      Shal-type; Shal-type voltage-gated potassium channels, N-terminal
      pfam00520
      Location:188 → 415
      Ion_trans; Ion transport protein
      pfam02214
      Location:43 → 132
      BTB_2; BTB/POZ domain
      pfam11879
      Location:445 → 540
      DUF3399; Domain of unknown function (DUF3399)

    10. XM_020862347.1 → XP_020718006.1  potassium voltage-gated channel protein Shal isoform X1

      UniProtKB/TrEMBL
      W8C343
      Related
      XP_020718006.1, XM_020862347.1
      Conserved Domains (4) summary
      pfam11601
      Location:2 → 27
      Shal-type; Shal-type voltage-gated potassium channels, N-terminal
      pfam00520
      Location:188 → 415
      Ion_trans; Ion transport protein
      pfam02214
      Location:43 → 132
      BTB_2; BTB/POZ domain
      pfam11879
      Location:445 → 540
      DUF3399; Domain of unknown function (DUF3399)

    RNA

    1. XR_002307545.1 RNA Sequence

      Related
      XR_002307545.1
    Nucleotide Protein
    Heading Accession and Version

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