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    TRIM62 tripartite motif containing 62 [ Struthio camelus (African ostrich) ]

    Gene ID: 104141109, updated on 21-Nov-2024

    Summary

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    Gene symbol
    TRIM62
    Gene description
    tripartite motif containing 62
    Locus tag
    N308_01548
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Struthio camelus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Palaeognathae; Struthioniformes; Struthionidae; Struthio
    Orthologs
    human mouse all
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    Genomic context

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    See TRIM62 in Genome Data Viewer
    Location:
    chromosome: 21
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    RS_2024_10 current bStrCam1.hap1 (GCF_040807025.1) 21 NC_090962.1 (8789333..8806526)
    100 previous assembly ASM69896v1 (GCF_000698965.1) Unplaced Scaffold NW_009270193.1 (91093..100782)

    Chromosome 21 - NC_090962.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 2 member 1 Neighboring gene polyhomeotic homolog 2 Neighboring gene zinc finger protein 362 Neighboring gene uncharacterized LOC138061851 Neighboring gene transmembrane protein 269 Neighboring gene heparan sulfate proteoglycan 2 Neighboring gene chymotrypsin like elastase 3B

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin protein ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in innate immune response IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of NF-kappaB transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of canonical NF-kappaB signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    E3 ubiquitin-protein ligase TRIM62
    Names
    Tripartite motif-containing protein 62

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_040807025.1-RS_2024_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bStrCam1.hap1

    Genomic

    1. NC_090962.1 Reference bStrCam1.hap1

      Range
      8789333..8806526
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_068916240.1 → XP_068772341.1  E3 ubiquitin-protein ligase TRIM62 isoform X1

    2. XM_068916245.1 → XP_068772346.1  E3 ubiquitin-protein ligase TRIM62 isoform X2

    3. XM_068916239.1 → XP_068772340.1  E3 ubiquitin-protein ligase TRIM62 isoform X1

    4. XM_068916241.1 → XP_068772342.1  E3 ubiquitin-protein ligase TRIM62 isoform X1

    5. XM_068916238.1 → XP_068772339.1  E3 ubiquitin-protein ligase TRIM62 isoform X1

    6. XM_068916243.1 → XP_068772344.1  E3 ubiquitin-protein ligase TRIM62 isoform X1

    7. XM_068916244.1 → XP_068772345.1  E3 ubiquitin-protein ligase TRIM62 isoform X1

    Nucleotide Protein
    Heading Accession and Version

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