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    LOC104814138 polyadenylate-binding protein RBP47B [ Tarenaya hassleriana ]

    Gene ID: 104814138, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC104814138
    Gene description
    polyadenylate-binding protein RBP47B
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Tarenaya hassleriana
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; New World clade; Tarenaya
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    Genomic context

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    See LOC104814138 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    101 current ASM46358v1 (GCF_000463585.1) Unplaced Scaffold NW_010965451.1 (115282..118635, complement)

    NW_010965451.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC104814675 Neighboring gene la-related protein 6C Neighboring gene cyclin-dependent kinase inhibitor 7 Neighboring gene uncharacterized LOC104814140

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_010965451.1 Unplaced Scaffold Reference ASM46358v1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    polyadenylate-binding protein RBP47B

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Tarenaya hassleriana Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM46358v1

    Genomic

    1. NW_010965451.1 Reference ASM46358v1

      Range
      115282..118635 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_010542021.1 → XP_010540323.1  polyadenylate-binding protein RBP47B

      Conserved Domains (4) summary
      cd12344
      Location:81 → 161
      RRM1_SECp43_like; RNA recognition motif 1 in tRNA selenocysteine-associated protein 1 (SECp43) and similar proteins
      cd12345
      Location:173 → 252
      RRM2_SECp43_like; RNA recognition motif 2 in tRNA selenocysteine-associated protein 1 (SECp43) and similar proteins
      cd12346
      Location:292 → 363
      RRM3_NGR1_NAM8_like; RNA recognition motif 3 in yeast negative growth regulatory protein NGR1 (RBP1), yeast protein NAM8 and similar proteins
      TIGR01661
      Location:78 → 365
      ELAV_HUD_SF; ELAV/HuD family splicing factor
    Nucleotide Protein
    Heading Accession and Version

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