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    PHSY_003831 choline dehydrogenase [ Pseudozyma hubeiensis SY62 ]

    Gene ID: 24109117, updated on 9-Nov-2023

    Summary

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    Gene symbol
    PHSY_003831
    Gene description
    choline dehydrogenase
    Locus tag
    PHSY_003831
    Gene type
    protein coding
    RNA name
    choline dehydrogenase
    RefSeq status
    PROVISIONAL
    Organism
    Pseudozyma hubeiensis SY62 (strain: SY62)
    Lineage
    Eukaryota; Fungi; Dikarya; Basidiomycota; Ustilaginomycotina; Ustilaginomycetes; Ustilaginales; Ustilaginaceae; mitosporic Ustilaginaceae; Pseudozyma
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    Genomic context

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    See PHSY_003831 in Genome Data Viewer
    Exon count:
    1

    NW_012133820.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene dienelactone hydrolase Neighboring gene hypothetical protein Neighboring gene beta-alanine synthase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_012133820.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Draft Genome Sequence of the Basidiomycetous Yeast-Like Fungus Pseudozyma hubeiensis SY62, Which Produces an Abundant Amount of the Biosurfactant Mannosylerythritol Lipids. Konishi M, et al. Genome Announc, 2013 Jun 27. PMID 23814110, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables flavin adenine dinucleotide binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables oxidoreductase activity, acting on CH-OH group of donors IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Names
    choline dehydrogenase

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NW_012133820.1 Reference assembly

      Range
      304646..306475 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_012334448.1 → XP_012189838.1  choline dehydrogenase [Pseudozyma hubeiensis SY62]

      See identical proteins and their annotated locations for XP_012189838.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      R9P4H3
      Conserved Domains (3) summary
      PRK02106
      Location:17 → 603
      PRK02106; choline dehydrogenase; Validated
      pfam05199
      Location:460 → 598
      GMC_oxred_C; GMC oxidoreductase
      cl21454
      Location:86 → 328
      NADB_Rossmann; Rossmann-fold NAD(P)(+)-binding proteins
    Nucleotide Protein
    Heading Accession and Version

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