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    LOC6623692 trimeric intracellular cation channel type 1B.1 [ Drosophila virilis ]

    Gene ID: 6623692, updated on 12-Dec-2024

    Summary

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    Gene symbol
    LOC6623692
    Gene description
    trimeric intracellular cation channel type 1B.1
    Locus tag
    Dvir_GJ12782
    See related
    EnsemblRapid:LOC6623692
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Drosophila virilis
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila
    Also known as
    GJ12782; GJ12782-PA
    Orthologs
    fruit fly all
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    Genomic context

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    See LOC6623692 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_12 current Dvir_AGI_RSII-ME (GCF_030788295.1) 3 NC_091545.1 (2967112..2968669)
    103 previous assembly DvirRS2 (GCF_003285735.1) Unplaced Scaffold NW_022587564.1 (21280448..21281988, complement)

    Chromosome 3 - NC_091545.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC138911143 Neighboring gene uncharacterized LOC6623606 Neighboring gene uncharacterized LOC6623524 Neighboring gene protein dpy-30 homolog Neighboring gene retinin

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by GO

    Function Evidence Code Pubs
    enables identical protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables potassium channel activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in potassium ion transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    trimeric intracellular cation channel type 1B.1
    Names
    Dvir\GJ12782
    Dvir\GJ12782-PA
    dvir_GLEANR_12728

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_030788295.1-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Dvir_AGI_RSII-ME

    Genomic

    1. NC_091545.1 Reference Dvir_AGI_RSII-ME

      Range
      2967112..2968669
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002046189.4 → XP_002046225.2  trimeric intracellular cation channel type 1B.1

      UniProtKB/TrEMBL
      B4LI23
      Related
      XP_002046225.2
      Conserved Domains (1) summary
      pfam05197
      Location:47 → 232
      TRIC; TRIC channel
    Nucleotide Protein Strain
    Heading Accession and Version

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