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    2700097O09Rikl RIKEN cDNA 2700097009 gene like [ Rattus norvegicus (Norway rat) ]

    Gene ID: 314128, updated on 9-Dec-2024

    Summary

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    Official Symbol
    2700097O09Riklprovided by RGD
    Official Full Name
    RIKEN cDNA 2700097009 gene likeprovided by RGD
    Primary source
    RGD:1304624
    See related
    EnsemblRapid:ENSRNOG00000006986 AllianceGenome:RGD:1304624
    Gene type
    protein coding
    RefSeq status
    PREDICTED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1304624
    Summary
    Predicted to enable methyltransferase activity. [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Adrenal (RPKM 29.6), Kidney (RPKM 26.1) and 9 other tissues See more
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    Genomic context

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    See 2700097O09Rikl in Genome Data Viewer
    Location:
    6q23
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 6 NC_086024.1 (78277757..78322329, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 6 NC_051341.1 (72542166..72587511, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 6 NC_005105.4 (75945889..75996483, complement)

    Chromosome 6 - NC_086024.1Genomic Context describing neighboring genes Neighboring gene cofilin 2 Neighboring gene bromodomain adjacent to zinc finger domain, 1A Neighboring gene uncharacterized LOC108351236 Neighboring gene U6 spliceosomal RNA Neighboring gene signal recognition particle 54A Neighboring gene uncharacterized LOC134479210 Neighboring gene family with sequence similarity 177, member A1 Neighboring gene protein phosphatase 2, regulatory subunit B'', gamma Neighboring gene protein only RNase P catalytic subunit

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables methyltransferase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein LOC314128

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001108022.1 → NP_001101492.1  uncharacterized protein LOC314128

      See identical proteins and their annotated locations for NP_001101492.1

      Status: PREDICTED

      Source sequence(s)
      CH473947
      UniProtKB/TrEMBL
      A6HBL5, D4A3D3
      Related
      ENSRNOP00000009180.4, ENSRNOT00000009180.6

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086024.1 Reference GRCr8

      Range
      78277757..78322329 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063261911.1 → XP_063117981.1  uncharacterized protein LOC314128 isoform X5

    2. XM_063261910.1 → XP_063117980.1  uncharacterized protein LOC314128 isoform X2

    3. XM_039112233.2 → XP_038968161.1  uncharacterized protein LOC314128 isoform X3

    4. XM_006240102.5 → XP_006240164.1  uncharacterized protein LOC314128 isoform X1

    5. XM_039112236.2 → XP_038968164.1  uncharacterized protein LOC314128 isoform X4

    6. XM_039112231.2 → XP_038968159.1  uncharacterized protein LOC314128 isoform X3

    7. XM_063261913.1 → XP_063117983.1  uncharacterized protein LOC314128 isoform X6

    8. XM_039112232.2 → XP_038968160.1  uncharacterized protein LOC314128 isoform X3

    9. XM_063261912.1 → XP_063117982.1  uncharacterized protein LOC314128 isoform X6

    RNA

    1. XR_005505515.2 RNA Sequence

    2. XR_005505513.2 RNA Sequence

    3. XR_005505514.2 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

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