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    Tmem154 transmembrane protein 154 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 361972, updated on 9-Dec-2024

    Summary

    Official Symbol
    Tmem154provided by RGD
    Official Full Name
    transmembrane protein 154provided by RGD
    Primary source
    RGD:1563262
    See related
    EnsemblRapid:ENSRNOG00000010866 AllianceGenome:RGD:1563262
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1563262
    Summary
    Predicted to be located in membrane. Orthologous to human TMEM154 (transmembrane protein 154). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Spleen (RPKM 277.6), Thymus (RPKM 163.2) and 2 other tissues See more
    Orthologs
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    Genomic context

    See Tmem154 in Genome Data Viewer
    Location:
    2q34
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 2 NC_086020.1 (172313290..172352939)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 2 NC_051337.1 (170015247..170054903)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 2 NC_005101.4 (183674361..183714232)

    Chromosome 2 - NC_086020.1Genomic Context describing neighboring genes Neighboring gene ARF interacting protein 1 Neighboring gene tigger transposable element derived 4 Neighboring gene F-box and WD repeat domain containing 7 Neighboring gene uncharacterized LOC134485740 Neighboring gene uncharacterized LOC108350048 Neighboring gene dual endothelin 1, angiotensin II receptor

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001401895.2NP_001388824.1  transmembrane protein 154 precursor

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000002
      UniProtKB/TrEMBL
      A0A8I6A9P5, A6J5X2, A6J5X3, D4ABU1
      Related
      ENSRNOP00000107033.1, ENSRNOT00000157330.1

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086020.1 Reference GRCr8

      Range
      172313290..172352939
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001108553.1: Suppressed sequence

      Description
      NM_001108553.1: This RefSeq was removed because currently there is insufficient support for the transcript and the protein.