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    LOC8064171 SNF1-related protein kinase regulatory subunit beta-1 [ Sorghum bicolor (sorghum) ]

    Gene ID: 8064171, updated on 22-Oct-2023

    Summary

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    Gene symbol
    LOC8064171
    Gene description
    SNF1-related protein kinase regulatory subunit beta-1
    Locus tag
    SORBI_3009G180200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sorghum bicolor
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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    Genomic context

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    See LOC8064171 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    101 current Sorghum_bicolor_NCBIv3 (GCF_000003195.3) 9 NC_012878.2 (53445363..53448738, complement)

    Chromosome 9 - NC_012878.2Genomic Context describing neighboring genes Neighboring gene calmodulin Neighboring gene resuscitation-promoting factor RpfA Neighboring gene non-specific lipid transfer protein GPI-anchored 2 Neighboring gene leucine-rich repeat protein 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_012878.2 Chromosome 9 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    SNF1-related protein kinase regulatory subunit beta-1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sorghum bicolor Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sorghum_bicolor_NCBIv3 Primary Assembly

    Genomic

    1. NC_012878.2 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

      Range
      53445363..53448738 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021448269.1 → XP_021303944.1  SNF1-related protein kinase regulatory subunit beta-1 isoform X1

      Conserved Domains (2) summary
      pfam04739
      Location:324 → 391
      AMPKBI; 5'-AMP-activated protein kinase beta subunit, interaction domain
      pfam16561
      Location:211 → 291
      AMPK1_CBM; Glycogen recognition site of AMP-activated protein kinase

    2. XM_002441255.2 → XP_002441300.1  SNF1-related protein kinase regulatory subunit beta-1 isoform X4

      See identical proteins and their annotated locations for XP_002441300.1

      UniProtKB/TrEMBL
      A0A921U4M1, C5Z085
      Conserved Domains (2) summary
      pfam04739
      Location:217 → 284
      AMPKBI; 5'-AMP-activated protein kinase beta subunit, interaction domain
      pfam16561
      Location:103 → 183
      AMPK1_CBM; Glycogen recognition site of AMP-activated protein kinase

    3. XM_021448270.1 → XP_021303945.1  SNF1-related protein kinase regulatory subunit beta-1 isoform X2

      Conserved Domains (1) summary
      pfam16561
      Location:211 → 290
      AMPK1_CBM; Glycogen recognition site of AMP-activated protein kinase

    4. XM_021448271.1 → XP_021303946.1  SNF1-related protein kinase regulatory subunit beta-1 isoform X3

      Conserved Domains (1) summary
      pfam16561
      Location:211 → 290
      AMPK1_CBM; Glycogen recognition site of AMP-activated protein kinase
    Nucleotide Protein
    Heading Accession and Version

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