LOCUS NM_133557 3407 bp mRNA linear ROD 03-APR-2024
DEFINITION Rattus norvegicus integrin alpha FG-GAP repeat containing 1
(Itfg1), mRNA.
ACCESSION NM_133557 XM_346518
VERSION NM_133557.2
KEYWORDS RefSeq; RefSeq Select.
SOURCE Rattus norvegicus (Norway rat)
ORGANISM Rattus norvegicus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Rattus.
REFERENCE 1 (bases 1 to 3407)
AUTHORS Principe,S., Jones,E.E., Kim,Y., Sinha,A., Nyalwidhe,J.O.,
Brooks,J., Semmes,O.J., Troyer,D.A., Lance,R.S., Kislinger,T. and
Drake,R.R.
TITLE In-depth proteomic analyses of exosomes isolated from expressed
prostatic secretions in urine
JOURNAL Proteomics 13 (10-11), 1667-1671 (2013)
PUBMED 23533145
REFERENCE 2 (bases 1 to 3407)
AUTHORS Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
TITLE Phylogenetic-based propagation of functional annotations within the
Gene Ontology consortium
JOURNAL Brief Bioinform 12 (5), 449-462 (2011)
PUBMED 21873635
REFERENCE 3 (bases 1 to 3407)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
PUBMED 12477932
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from BC085706.1.
On May 23, 2007 this sequence version replaced NM_133557.1.
##Evidence-Data-START##
Transcript exon combination :: BC085706.1, AF480856.2 [ECO:0000332]
RNAseq introns :: single sample supports all introns
SAMD00132261, SAMD00132262
[ECO:0000348]
##Evidence-Data-END##
##RefSeq-Attributes-START##
RefSeq Select criteria :: based on single protein-coding transcript
##RefSeq-Attributes-END##
FEATURES Location/Qualifiers
source 1..3407
/organism="Rattus norvegicus"
/mol_type="mRNA"
/db_xref="taxon:10116"
/chromosome="19"
/map="19p11"
gene 1..3407
/gene="Itfg1"
/gene_synonym="Cda08"
/note="integrin alpha FG-GAP repeat containing 1"
/db_xref="GeneID:171083"
/db_xref="RGD:619898"
exon 1..348
/gene="Itfg1"
/gene_synonym="Cda08"
/inference="alignment:Splign:2.1.0"
misc_feature 48..50
/gene="Itfg1"
/gene_synonym="Cda08"
/note="upstream in-frame stop codon"
CDS 144..1976
/gene="Itfg1"
/gene_synonym="Cda08"
/note="CDA08-like protein; linkin; integrin-alpha FG-GAP
repeat-containing protein 1; T-cell immunomodulatory
protein; hypothetical protein CDA08"
/codon_start=1
/product="T-cell immunomodulatory protein precursor"
/protein_id="NP_598241.2"
/db_xref="GeneID:171083"
/db_xref="RGD:619898"
/translation="MAAGLLPSARAVLALLFLGLALLSVGPAPAQALHNVTAELFGGE
AWGTLAAFGDLNSDKQTDLFVLRERNDLIVFLADQSAPYFKPKVKVSLKNFSALVTSV
VPGDYDGDSQMDVLLTYFPQNHSNNELGAVIFWGQNQTLDPKNMTILNRTFHDQPLIM
DFNGDLIPDVFAITNESSQPQILLGGDLSWHPALTTKSKMRDPHSHAFIDLTEDFTAD
LFLTTLSASNTFQFEIWENLGGNFSIRSVFEKPKNLVVVGQSAFADFDGDGHMDHLLP
GCEDKDCQKSAIYLMRSGTGQWAPVLQDFSNKGTLWGFVPFVHEERPTAIPVPLTLHI
GDYNMDGYPDALAILKNTSGSNQQAFLLENVPCNNASCEEVHRMFKVYWDLAGLNLIK
DAMVATFFDIYEDGILDIIVLSKGYTKSDVAIHTLKNNFEADAYFVKVIVLSGLCSSD
CPRKITPFGVNQPGPYIMYTTVDANGYLKNGSAGQLSQSAHLALQLPYNVLGLGRSAN
FLDHLFVGIPRPSGEKSIRKQEWTAIIPNSQLIVIPYPHSVPRSWSAKLYLTPSNIVL
LTAVALTGVCVFILAIIAILHWQEKKADDREKRQEAHRFHFDAM"
sig_peptide 144..239
/gene="Itfg1"
/gene_synonym="Cda08"
/inference="COORDINATES: ab initio prediction:SignalP:6.0"
mat_peptide 240..1973
/gene="Itfg1"
/gene_synonym="Cda08"
/product="T-cell immunomodulatory protein.
/id=PRO_0000034356"
/note="propagated from UniProtKB/Swiss-Prot (Q8R4E1.1)"
misc_feature 246..248
/gene="Itfg1"
/gene_synonym="Cda08"
/note="N-linked (GlcNAc...) asparagine.
/evidence=ECO:0000255; propagated from
UniProtKB/Swiss-Prot (Q8R4E1.1); glycosylation site"
misc_feature 423..425
/gene="Itfg1"
/gene_synonym="Cda08"
/note="N-linked (GlcNAc...) asparagine.
/evidence=ECO:0000255; propagated from
UniProtKB/Swiss-Prot (Q8R4E1.1); glycosylation site"
misc_feature 435..548
/gene="Itfg1"
/gene_synonym="Cda08"
/note="propagated from UniProtKB/Swiss-Prot (Q8R4E1.1);
Region: FG-GAP 1, atypical"
misc_feature 510..512
/gene="Itfg1"
/gene_synonym="Cda08"
/note="N-linked (GlcNAc...) asparagine.
/evidence=ECO:0000255; propagated from
UniProtKB/Swiss-Prot (Q8R4E1.1); glycosylation site"
misc_feature 555..557
/gene="Itfg1"
/gene_synonym="Cda08"
/note="N-linked (GlcNAc...) asparagine.
/evidence=ECO:0000255; propagated from
UniProtKB/Swiss-Prot (Q8R4E1.1); glycosylation site"
misc_feature 576..578
/gene="Itfg1"
/gene_synonym="Cda08"
/note="N-linked (GlcNAc...) asparagine.
/evidence=ECO:0000255; propagated from
UniProtKB/Swiss-Prot (Q8R4E1.1); glycosylation site"
misc_feature 591..593
/gene="Itfg1"
/gene_synonym="Cda08"
/note="N-linked (GlcNAc...) asparagine.
/evidence=ECO:0000255; propagated from
UniProtKB/Swiss-Prot (Q8R4E1.1); glycosylation site"
misc_feature 600..692
/gene="Itfg1"
/gene_synonym="Cda08"
/note="propagated from UniProtKB/Swiss-Prot (Q8R4E1.1);
Region: FG-GAP 2, atypical"
misc_feature 666..668
/gene="Itfg1"
/gene_synonym="Cda08"
/note="N-linked (GlcNAc...) asparagine.
/evidence=ECO:0000255; propagated from
UniProtKB/Swiss-Prot (Q8R4E1.1); glycosylation site"
misc_feature 864..866
/gene="Itfg1"
/gene_synonym="Cda08"
/note="N-linked (GlcNAc...) asparagine.
/evidence=ECO:0000255; propagated from
UniProtKB/Swiss-Prot (Q8R4E1.1); glycosylation site"
misc_feature 909..1016
/gene="Itfg1"
/gene_synonym="Cda08"
/note="propagated from UniProtKB/Swiss-Prot (Q8R4E1.1);
Region: FG-GAP 3, atypical"
misc_feature 1194..1196
/gene="Itfg1"
/gene_synonym="Cda08"
/note="N-linked (GlcNAc...) asparagine.
/evidence=ECO:0000255; propagated from
UniProtKB/Swiss-Prot (Q8R4E1.1); glycosylation site"
misc_feature 1248..1250
/gene="Itfg1"
/gene_synonym="Cda08"
/note="N-linked (GlcNAc...) asparagine.
/evidence=ECO:0000255; propagated from
UniProtKB/Swiss-Prot (Q8R4E1.1); glycosylation site"
misc_feature 1581..1583
/gene="Itfg1"
/gene_synonym="Cda08"
/note="N-linked (GlcNAc...) asparagine.
/evidence=ECO:0007744|PubMed:24090084; propagated from
UniProtKB/Swiss-Prot (Q8R4E1.1); glycosylation site"
misc_feature 1833..1895
/gene="Itfg1"
/gene_synonym="Cda08"
/note="propagated from UniProtKB/Swiss-Prot (Q8R4E1.1);
transmembrane region"
exon 349..421
/gene="Itfg1"
/gene_synonym="Cda08"
/inference="alignment:Splign:2.1.0"
exon 422..567
/gene="Itfg1"
/gene_synonym="Cda08"
/inference="alignment:Splign:2.1.0"
exon 568..625
/gene="Itfg1"
/gene_synonym="Cda08"
/inference="alignment:Splign:2.1.0"
exon 626..700
/gene="Itfg1"
/gene_synonym="Cda08"
/inference="alignment:Splign:2.1.0"
exon 701..795
/gene="Itfg1"
/gene_synonym="Cda08"
/inference="alignment:Splign:2.1.0"
exon 796..857
/gene="Itfg1"
/gene_synonym="Cda08"
/inference="alignment:Splign:2.1.0"
exon 858..939
/gene="Itfg1"
/gene_synonym="Cda08"
/inference="alignment:Splign:2.1.0"
exon 940..1034
/gene="Itfg1"
/gene_synonym="Cda08"
/inference="alignment:Splign:2.1.0"
exon 1035..1207
/gene="Itfg1"
/gene_synonym="Cda08"
/inference="alignment:Splign:2.1.0"
exon 1208..1358
/gene="Itfg1"
/gene_synonym="Cda08"
/inference="alignment:Splign:2.1.0"
exon 1359..1467
/gene="Itfg1"
/gene_synonym="Cda08"
/inference="alignment:Splign:2.1.0"
exon 1468..1511
/gene="Itfg1"
/gene_synonym="Cda08"
/inference="alignment:Splign:2.1.0"
exon 1512..1590
/gene="Itfg1"
/gene_synonym="Cda08"
/inference="alignment:Splign:2.1.0"
exon 1591..1715
/gene="Itfg1"
/gene_synonym="Cda08"
/inference="alignment:Splign:2.1.0"
exon 1716..1798
/gene="Itfg1"
/gene_synonym="Cda08"
/inference="alignment:Splign:2.1.0"
exon 1799..1916
/gene="Itfg1"
/gene_synonym="Cda08"
/inference="alignment:Splign:2.1.0"
exon 1917..3385
/gene="Itfg1"
/gene_synonym="Cda08"
/inference="alignment:Splign:2.1.0"
ORIGIN
1 gagaaacagc cccagggcag cgtgagaata caacgagggg ctgcccgtaa gctcgcaccc
61 cgagtctttt ctcggtcggc cggttgcacg gtgctttgcg gctgccgtca agcgcggcgg
121 aggccggccg ggccgaaggc gccatggcgg caggcctgct gcctagcgcc agggcggtgc
181 tggcgctgct gttcttggga ctcgcgctgc tgagcgttgg gcctgctccg gcacaggctc
241 tacacaatgt cacggccgag ctctttgggg gtgaggcctg gggcaccctg gcggccttcg
301 gtgacctcaa ctccgacaaa cagacggacc tcttcgtgct gcgggaaaga aatgacttaa
361 tcgtcttttt ggcagatcag agtgcaccct attttaaacc caaggtaaag gtgtccttga
421 agaatttcag tgcattggta acaagtgtag tccctggtga ttatgatggg gactcacaaa
481 tggatgtcct gctcacatat tttccccaaa atcatagcaa caatgaatta ggagctgtta
541 tcttctgggg acaaaatcaa acattagatc ctaaaaacat gaccatactc aataggactt
601 ttcatgacca gccactgatt atggacttca acggtgatct aattcctgat gtgtttgcta
661 tcacaaatga atccagccag ccgcagatac tgttaggagg agatttgtca tggcatcctg
721 ccttgaccac taagagtaaa atgcgggacc cacattctca tgcatttatt gatctgactg
781 aagattttac agcagattta ttccttacaa cattgtctgc ctctaatacc ttccagtttg
841 agatatggga aaatttgggt ggaaacttct ctatccgtag tgtctttgaa aaacctaaaa
901 atctggtggt ggttggacag tcagcattcg cagactttga tggagatgga cacatggatc
961 acttgctgcc aggctgtgaa gataaggact gtcagaaaag tgccatttat ttaatgagat
1021 caggaacagg acagtgggct cctgtgcttc aggattttag caataagggc acactctggg
1081 gctttgtccc attcgtgcat gaagagcggc caactgcaat tccagttcca ctcacacttc
1141 acattggaga ctacaacatg gacggctacc ctgatgctct ggccatatta aagaatacat
1201 ctggaagcaa tcagcaagcc ttcttactgg agaatgtccc gtgcaataat gcgagctgtg
1261 aggaagtgca ccggatgttc aaagtctact gggacctagc aggcctgaat ctaatcaaag
1321 acgccatggt tgccaccttt tttgacattt atgaagatgg gatcttggac attatagtcc
1381 tcagtaaagg atacaccaag agtgatgttg ccatccacac actcaaaaat aactttgaag
1441 cagatgcgta ttttgttaaa gtcattgttc ttagtggtct atgttctagt gactgtcctc
1501 gtaagataac accctttgga gtgaatcagc ctggacctta tatcatgtac acaacagtag
1561 atgcaaatgg gtatctgaaa aatggctcag ctgggcagct tagccagtca gcacacttag
1621 ctctccagct gccttacaat gtgcttggtt taggccgaag tgccaatttc ctggaccatc
1681 tttttgttgg cattccccgt ccatctggag agaagtctat aaggaaacaa gagtggacag
1741 caatcattcc aaattcgcag ctgattgtca tcccataccc tcacagtgtc ccgagaagct
1801 ggagtgccaa gttgtacctg acaccaagta acattgtcct gctgactgcg gtagccctca
1861 ccggcgtctg cgtcttcatc ctggcaataa tcgccatttt acactggcag gaaaagaaag
1921 ctgacgacag ggaaaagcgg caagaagcac atcgcttcca ctttgacgct atgtgattct
1981 gctttcagtg gtacatcctg gaagtcactt gattagcgaa acactaaact ttgactccta
2041 gtaaaaaaaa taatggatct gagatattta taaattatgc cttccttgtc aattattgga
2101 aaatactgaa ataaatatgg cctgcatatc tcataaggtc tgctttaagc actctgtata
2161 taataaccta gcttctttat tcagtggtac tgagcattct gttcctctgt ggaatgtgtt
2221 gcatgtgctc tggtatttgt gtttacaatg ttgttagaat tacgatggtg gaaggacatg
2281 taaataaaaa ctatttaaac aacctggggc caggacattg ttccacctaa attgatcttg
2341 ctttttatct taaaaatgca cactttctca actatgtggc agataaagtt attcaactaa
2401 cattcttcac tgcagggcag agctctgagt ggcatggaat gagactaatt agccaggctt
2461 tggaatctca gtaggacaga ctgccttaga tgcctggttc tacagcttac aactctctga
2521 atctggctac tgcttagcct ctctgtaagc cgcagtcttg tttatatgat gtggcttata
2581 tgcctgttca cttgagttat cgtggatgta tactgactga tgcacacagt gatcacttga
2641 gttatcatgg atgtacactg tctgatgcac atgtgatcac ttgagttatc atgaatgtac
2701 attgttatat gatgcacatg tgttcacttg agttatcatg gatgtacatt gtctgatgca
2761 catggtgtac ttagctcagt gcctgagcaa acaggaagtg ttcaccaagc ggaggctgtc
2821 cttgctcttg ccggtgattt aatctactac tgtatagaat ggatcattat tatagacata
2881 aggacatact ctttggaaag cttaaattat tggtggtaca tatctcatat aattaatttg
2941 tttgactagc tatataatac tacccaagag taaatgtatc ctaaaacctg gtacttgaat
3001 actgatcctt gtacagtgat gtaaatcatt tggtctcttg aaagaaagct gacagaggca
3061 aactctgggg gtgcaaactg ccgtcacagc tctgctcgca ggacgggaaa gtcagtctca
3121 gttctcttca gaccacaggg ttcatactat gaactttaca ttgccaaaat tcactttaaa
3181 attatttaaa ttagagttga ggagagaggt gatattcaga ttactaagac atgctgtggc
3241 tgtaaactat aaaaattcct ctagaacagt tttgtctgtg ttattttccc cactgcagtt
3301 cactgaaggg catgtgctcc tttttatttc tatttaagca tgttaatgta tcgtcttaat
3361 aaatactcct tactgattga aaaaaaaaaa aaaaaaaaaa aaaaaaa
//