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NCBI Reference Sequence: XM_016194534.2
FASTA Graphics
LOCUS XM_016194534 5096 bp mRNA linear MAM 11-OCT-2023 DEFINITION PREDICTED: Erinaceus europaeus extended synaptotagmin 2 (ESYT2), transcript variant X2, mRNA. ACCESSION XM_016194534 VERSION XM_016194534.2 DBLINK BioProject: PRJNA986567 KEYWORDS RefSeq. SOURCE Erinaceus europaeus (western European hedgehog) ORGANISM Erinaceus europaeus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Eulipotyphla; Erinaceidae; Erinaceinae; Erinaceus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_080169) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Oct 11, 2023 this sequence version replaced XM_016194534.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_950295315.1-RS_2023_10 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.2 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 10/04/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5096 /organism="Erinaceus europaeus" /mol_type="mRNA" /db_xref="taxon:9365" /chromosome="8" gene 1..5096 /gene="ESYT2" /note="extended synaptotagmin 2; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins" /db_xref="GeneID:103126670" CDS 62..2659 /gene="ESYT2" /codon_start=1 /product="extended synaptotagmin-2 isoform X2" /protein_id="XP_016050020.2" /db_xref="GeneID:103126670" /translation="MSGAGGGGPEAGAEAGPAALRADVAGLLAQLARSLALLLPVYAL GYLGLSFSWLLLALGLLACCRRRQSLRASRLGRALALLDAPEPDAAAATPGLRACDLP AWVHFPDTERAEWLNKTVKHMWPFICQFIEKLFRETIEPAVRGANAYLNTFSFTKVDV GQQPLRINGVKVYTENVDKRQIILDLQISFVGNCEIDLEIKRYFCRAGVQSIQIHGTM RVILEPLIGDMPLVGALSIFFLRKPLLEINWTGLTNLLDIPGLNGLSDSIILDIISNY LVLPNRVTVPLVSEVQIAQLRFPVPKGVLRIHFLEAQDLQGKDTYLKGLVKGKSDPYG VIRVGNQIFQSKVIKENLCPKWNEVHEALVYEHPGQELEIELFDEDPDKDDFLGSLMI DLTEVEKERLLDEWFTLDEVPRGKLHLKLEWLTLVPHAAHLDQVLMDIRADKDQANDG LSSSLLILYLDSARNLPSNPLEFNPDVLEKTAVQKALKSGKKISSNPNPQVQMSVGHK AQESKIRYKTNEPVWEEHFTFFIHNPKRQDLEVEVRDEQHQCSLGSLTVPLSQLLSSE DMTLSQRFQLSNSGPNSSLKMKLALKVLHLEKPERTPDHQHSAQVKRPSIPKEGRRVS VRSQTAASPGVTSSSTAPSTPVPGGGQRPGLDEGAPPTEPSPQGPQDLGRSSSSLQVS SATYSPSHPSLKEPTPSIASDISLPIATQELRQRLRQLENGTTLGQSPLGQIQLTIRH SSQRNKLVVVVHACRNLIAFSEDGSDPYVRMYLLPDKRRSGRRKTHVSKKNLNPVFDQ SFDFSVSLPEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVTLASEELAKGWTQWYDLTE DGTRPQVVT" polyA_site 5096 /gene="ESYT2" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 ggcgccgctg ggctgaggcg ccgctgggcc gaggcgcggg ccggagcggc gcggcgcggc 61 catgagcggc gcaggcggcg ggggcccaga ggcgggcgcg gaggccgggc cggcggcgct 121 gcgcgcggac gtggcggggc tgctggcgca gctggcgcgc agcctggcgc tgctgctgcc 181 cgtgtacgcg ctgggctacc tgggcctgag cttcagctgg ctgctgctgg ccctcgggct 241 gctcgcctgc tgccgccgcc gccagagcct ccgcgcctcc cgcctgggcc gcgcgctcgc 301 gctgctggac gctccggagc cggacgccgc ggccgccacc ccggggctgc gcgcctgcga 361 cctgccggcc tgggttcact ttccagacac ggaaagggca gagtggctaa ataagaccgt 421 gaagcacatg tggcccttca tttgccagtt catagagaag ctgttccgag agaccatcga 481 gcctgccgtc cggggtgcaa acgcctacct caacaccttc agcttcacca aggtggacgt 541 gggccagcag ccccttagga tcaatggtgt caaggtctat actgaaaacg tggacaaaag 601 acaaattatt ttggaccttc agattagctt tgtaggaaac tgtgagatcg acttggagat 661 aaagcggtat ttctgcagag ctggtgtgca gagcatccag atccatggaa ctatgcgggt 721 gatcctggag ccgctgatcg gagacatgcc tttggtgggg gctctgtcca tcttcttcct 781 caggaagcct cttttagaaa ttaactggac aggactgacc aaccttctcg acatccctgg 841 gctgaatggc ctgtcagatt ccatcatcct ggacatcata tcgaactacc tggtgcttcc 901 caaccgagtc acggtccctc tggtcagcga ggtccagata gcccagctgc gctttcctgt 961 gccaaaggga gttctgagga tccattttct tgaagctcag gaccttcagg gtaaagacac 1021 ttaccttaag ggccttgtca agggaaagtc agacccctat ggagtcattc gagttggcaa 1081 ccaaatcttc caaagcaagg tcatcaaaga gaacctttgt ccaaagtgga acgaggtgca 1141 tgaggcttta gtctacgagc accccgggca ggagctggag atcgagcttt tcgacgaaga 1201 cccggacaag gatgactttc ttgggagtct tatgattgat ctcactgaag ttgaaaagga 1261 gcgcctcttg gatgaatggt tcaccctgga cgaggttccc cgagggaagc tgcacctgaa 1321 gctggagtgg ctgaccctgg tgcctcacgc cgcccacctg gaccaggtgc tgatggacat 1381 cagagctgac aaggaccagg ctaatgatgg tctctcctcc tccctcctga ttctgtatct 1441 ggattcagcg cggaaccttc cgagtaaccc tttagaattt aaccctgatg tgttggagaa 1501 gactgcagtt cagaaagctt taaagtcggg gaagaaaata agcagcaacc caaaccctca 1561 ggtccagatg tccgtcgggc acaaggctca ggagagcaag atccggtaca agactaacga 1621 gcctgtgtgg gaggagcact tcaccttctt catccacaac cccaagcgcc aggacctcga 1681 ggtggaggtc agagacgaac agcaccagtg ctccctgggc agcctgacgg tcccactcag 1741 ccagctgctg tccagcgagg acatgaccct cagccagcgt ttccagctca gcaactcggg 1801 ccccaacagc tccctgaaga tgaagctggc cctcaaggtc ctccacctgg agaagccaga 1861 gaggacccca gaccaccagc actcggctca agtgaagcgg ccctccatcc ccaaagaggg 1921 caggagagtc tctgttcgct cccagacagc tgcgtcccct ggtgtgacca gcagcagcac 1981 agccccatcc acacctgtcc ccgggggagg ccagaggcca ggcctggacg agggggcccc 2041 gcccacagag cccagccccc aggggcctca ggacctgggc aggagctcct ccagcctgca 2101 ggtcagctct gccacctact ctcccagcca cccatccctc aaggagccca cgccaagcat 2161 cgcctccgac atctcactgc ccatcgccac gcaggagtta cggcagaggc tgcggcagct 2221 ggagaacggg acgaccctgg gccagtcccc tctgggccag atccaactga ccatccggca 2281 cagctcacag aggaacaagc tggtggtggt ggtgcacgcc tgcaggaatc tgattgcttt 2341 ctcggaagac ggctcggatc cctatgtccg catgtacctg cttccagaca agaggaggtc 2401 ggggaggagg aagacacatg tgtccaagaa gaacctgaac cccgtgtttg atcagagctt 2461 tgacttcagc gtctccttgc ctgaggtgca gagaagaacc ctggatgtgg ctgtgaagaa 2521 cagcggcggc ttcctgtcca aagacaaagg cctcctgggc aaagtgttag tcaccctggc 2581 ctcagaagaa cttgccaaag gctggaccca gtggtatgac ctgactgaag acgggacccg 2641 gccacaggtg gtgacataac tgccctggcg tggagagccc gggacactcc tcagacaccc 2701 actattttta taccttctgt gctgagttat aatagccaaa tagttttata aacatggggc 2761 tttggggcgg tttgggccaa tattgtcatt aaattttgta tgttaaagtt gctccagtat 2821 ttcaccactt cctgctgact ggacagcagg gtggcagtga gcggctgggc tggagctcct 2881 tctgtgcaga agccgccact gtgcgttctg ttattgcctt gtttgtaaat cactgaggta 2941 cactctgcct tgtaaataga ctctattttt tataatctct atgctgatct gaattcagaa 3001 gaaaatgaat cgagaaatat atatatgttt attttcttct aaagcttatt aagttcatat 3061 cagacagttc tgtctttgca gaataatgtc ctgtgaccta tttggtagtg tttcttttaa 3121 aaagaaaaag gctaaaagta tattgcagtc catactgaaa caaaacattt gacgaatgat 3181 ctcataaagt tatcctgctg cgaagtgctc gtgaggggaa acactggggt cctctagagt 3241 agtctgcact gtccagaggc ttgtcaaggc tccgactacg gagtggacta atgtgggatt 3301 tcctacatga agtgaaatgt cttaactttt agttgcttgt caggactgtt cgtgaagtag 3361 tgcacggata cacggtaaga ctcttcctgg ggccggtgca ggcaacctgc catgtcagcc 3421 cctaggctga gggacagtgg tcactgctcg attcttctca gtccgctgtg gacagcaggc 3481 tcatgccgtc ttcaggacca ggagccagac taggagagct ggcaggtgac tttagccagt 3541 ggcctgttca gcactgtgag tgtgaccgca gcacagggta ggtggccagg ctggccctca 3601 cctctctgcc tgtctacaca ggccccagac atccaaaggg ccagcatggc cagcgagcag 3661 catttcctgg gcctctcaca tcacgcctcc actgtcctct gtgtggggct gttgttacac 3721 agttcatatc tcacagtagt ctttatttta ggtttatgga agcatgttta tacacacagg 3781 attcccagac ctcttggcag cggggctgca gggctgtgcc tgctcataaa gcaggtgcat 3841 gggtgtagat gttttctgtg ttctgggtgg cagggtccag gggcctcctg aagtcatgga 3901 acattctaga atgggtacag caggccttct gtgtgctgag cagtgtgctg caggtgactt 3961 ccgtggcctt caagacatcc tgcggattcc ctcctggacc ctgggcctcc agcttgtgtg 4021 gccagtggac cgaagtgcct accgtgggcg cacacctcct gcctgcatgc ccctgcctcc 4081 agccacacgc agtccacact cggagcccgg ttcgccagtg gcggcgtctg cagctcacca 4141 cacgctccgc tcggcagagc ccagtttgac cttcctgcgt cctgcttggg aagcggcctc 4201 ggtgccactg ttcctgcagg aggagagttc tacacccctg ggcttgtgta cacaaggcct 4261 cgctggaccc tggcggtgag ggggtagtgg gtggtcactt gctgagtccc gtgcctgccc 4321 ttgatgtctg ctgagggacg tctgccatca cccctagacc aagtgattgg cggcaaattc 4381 ctagacacgt gttttcagcc catcctgaac ctgttggtac atgtcactgg actgaatgct 4441 ttaaacggtc agcagagtcc atacaatgga agctacaata cccaaagaaa accactgagc 4501 agcccacact gctcctggtg ggtgccagcg ggctggaggg agaggcctgg ctcccagctg 4561 tcctcacagg agacacctca catcctaggt gccctccaag gcctggcacc ccagcctgac 4621 catagggaac accgatttcc agctcttggt tatgcttcac aaggaaaggg ggctccacct 4681 tgccaacatc caagaaaccg gctgtgtgat aggattgggg ttgtctgtac acatagttgt 4741 tggtttgtcc tgtgccttaa agtctgagag ggagtgggga ggaagatagg aaggaaggac 4801 agacagacag agctgctgac ttcaggtccc agactcagat ggaagcagcc tctgccctct 4861 gtgcaccagg atgcagctct gtggttgcgt cctgcggggc tcctcctcct gccagccaca 4921 gggtgaccct tccggagccc tcggccgcac acagagtggg tgacgctgtg ggactggatc 4981 ccgccggcca ccactgcaca tggagaagca gcgggtcttc cagaatgtcc ttcatgttct 5041 gctcattcta cacaacagtg catgtattta ttcaataaag cttttatgtc agctca //
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