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PREDICTED: Rattus norvegicus RGD1562683 (RGD1562683), transcript variant X1, mRNA

NCBI Reference Sequence: XM_063270614.1

FASTA Graphics 

LOCUS       XM_063270614            4801 bp    mRNA    linear   ROD 22-FEB-2024
DEFINITION  PREDICTED: Rattus norvegicus RGD1562683 (RGD1562683), transcript
            variant X1, mRNA.
ACCESSION   XM_063270614
VERSION     XM_063270614.1
DBLINK      BioProject: PRJNA1074393
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086029) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4801
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="11"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     gene            1..4801
                     /gene="RGD1562683"
                     /note="RGD1562683; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 1 EST, 1 Protein"
                     /db_xref="GeneID:360700"
                     /db_xref="RGD:1562683"
     CDS             3253..3594
                     /gene="RGD1562683"
                     /codon_start=1
                     /product="uncharacterized protein LOC360700 isoform X1"
                     /protein_id="XP_063126684.1"
                     /db_xref="GeneID:360700"
                     /db_xref="RGD:1562683"
                     /translation="MRGLQLGCISMVGERREDTEKAATLSKPLMKADWSHRLELPADC
                     VLSEARGPETSISAMERCLCFPSLWLKFEREACAELSGRLALLLLWAQSLTPAWDSGH
                     IHRHFKVGCLL"
ORIGIN      
        1 gaaatgtcaa ggcccaccac caccagtgac acatttttct ccaacaaggt cacacctcct
       61 aatagtgcca cccttataca actatggggg ccattttcat tcaatccacc ccacacagtg
      121 agtatttgat gagtgcatga atgggtgata aggatgacta gttctctaca caaacttgta
      181 cagacatata tccaccctgg caattctaaa gacagacact tacacagtcc atttggctgt
      241 cagactcttg atgtaagaaa caatggctcc gaaggaattg gaattcacct aagaattctt
      301 gcagaaacaa ggaacaggct gagccttgtt gctagccaga gagagaactt gatcccctgg
      361 aagagatttt accccattcc agtaactgac tggattatct tgcaggccag accagagatg
      421 agacagagaa tcagtggtgg acaggtccat gctatgacca agacctctca ggtgtatatg
      481 tttccttcct tccgattaaa cctgaacttc atgtcagtgt cccagtgctg aacttggggt
      541 cactagacct ctttatgggt tctcctccca aagtggccac atgggataaa tctcctttct
      601 gttctcttca caggattctg ccacctggtg acactggagt cttcagtgtg cctaagcggt
      661 ctctgtcatg ttcatgtgac agcgaaattg ttaatatcat ggctctcaca cccaacatca
      721 ctgagtcaca tctcactgtt tcccaaatgg ctcataactg gcatgggcac tttgccatga
      781 agaacttaag aatcctgtgt tctcggagaa ataactcctt ggagcagcaa gagaaaagct
      841 ttctcctttc tccgtgaagt acaatgtcat aggaataata agctcctgtt aaagagaaaa
      901 ccgtgccgaa caaagccaaa tacataaggg agacttcatt cagggagcct tagtgaagga
      961 gaaaggccag aggttgagga caatgacaca gagttagtct ttctgatgcc tgtccaagta
     1021 ggctgctact ttcaagtgag actcggagag ggggaattgt cacaatgact ctgtttcaaa
     1081 gggatggctc ccaggtcctt cagaaagaca tttgcgagtt gtcaaactag aaacattttt
     1141 taatacattt cataaaatca cttttatttt gctatctagc tcaggctggc cttgaactca
     1201 cattcctcca gcctctgcct cccaagtgtt tgactacaga cctgtataca caccaacata
     1261 tcaggcacat agctatgagt tttgaagtga ctaagataga attaaccatg acagactttc
     1321 taaaagaagc aaagataggc ccctagaggt aggtataaga tggtcttaag ttgagtaaag
     1381 ctgggaaaac cacaaagcaa agggcaggtg gtttcctcag ggattcggtg agagcatcat
     1441 gttttataaa gctcactgga cagcctcctc agtgtaaagt gtctctgagg cagcaatagg
     1501 agaatacagc tagtgtccat ttcgtttggt aggtcggccg tctgggtcag ccaccaggaa
     1561 agaggatggt tcttgccatt cgctagggtc ttggtgttgg tgacaggaag tccttgaata
     1621 tggtcctgcc cacccaaggg tgttagtcaa gagtgccttc ctaacccaga tgctgttatc
     1681 ggacacaggt gtgtaaaata caccacaggc acaggtttgc ttttcctgag gatatcatac
     1741 ctttccatgg tggaggaaat gtccatggaa tgggagtaca ccttgagtag ggtcttaggg
     1801 ctttattgct gcgaagagac accatgacca cagcaactct tataaagaaa aaaacattta
     1861 attggggctg gcttacaggt cagaggttca gtccattatc atcatggcag gaagcatggt
     1921 ggcgtgtagg cagatttggt gcaggagagg tagctgagag ttctacatcc aggtcagtag
     1981 gcagcaggaa gcgacagtga cacgctggcc aggcaggagc ttctgagacc tcaaggccca
     2041 ccccctagtg atgcacttcc tccaacgaaa ccactcccac ttccacaagg ccacagctcc
     2101 taacagtgcc actccctttg ggcccatggt ggccattttt attcaaacca ccaagagtac
     2161 ctagtgtgcc aaactataga ttcaaaacta gtccagtatt agaaacaagg agaaagtaac
     2221 aaagaccgga aagatgcatg ggaactccga acttaaggga ttggttaaat caagaaggca
     2281 caggtatgtt cttactgaga gtgtaagctg tgggtcaggt gagagcagta ctgtgagtgc
     2341 cttagaaaag ctcggagatg tagaaaaatc tataagtgaa ggtgaatgaa acctttctca
     2401 catgccacgt tcttgagatt ttatacagtc agggctattt caggaccttt gccatggggc
     2461 tgcctcaaga ctccatggtt ctagtcagaa aacagatatt tggtgattat aatggaaatt
     2521 tatagtcatg cttttttttt tttaaatgcc agagaacatc tctccactgt tcgaaggtag
     2581 cacgtggctt ggtactctag cacacagcat gctttggtgt gtgcgttcaa ttaccccgca
     2641 aatgactgtt ctcaagcagc attctctacc tccccaatgc tgcgtgagac cctttaatac
     2701 agttcctcat gttgtggtga ccccgtcggt aaaattgttt agttgctaca ttgtaactgt
     2761 agtctgctac tgttgcggat tgtgatgtga acatctgtgc tttccagcgg tcttaggtga
     2821 cccttgtgaa aaggttgatt gacccctaaa agggtcgtac cccacgggtt gaggaccatt
     2881 gctctagatt ttcacttttg gtatccttaa aagttgtata cgttttagtg accttcgtta
     2941 aacttcacgg gtgacgaaag gagttacttc aaacacagcc cttaacactg gatttctttt
     3001 cttttctttt cttttttttt ttggagctgg ggaccgaacc cagggccttg tggttgctag
     3061 gcaagcactc taccactgag ctaaatcccc aaccccactg gatttctttt tgggaatccc
     3121 tctgtgttta cttttctatg gcagagttgg aggaaactaa gtccttttac ttaggagaga
     3181 gctggataag acttcagacc aggaggttac tcattgagag gattattctg aattaatact
     3241 gtgattctaa ccatgagggg cctccagtta ggctgcatct caatggtggg agagaggaga
     3301 gaggacacag agaaagcagc tactctgagc aagcccctca tgaaagctga ctggagccac
     3361 cggctggagc taccggctga ctgcgtactt tcagaagccc gaggaccaga aacttctatt
     3421 tcagcaatgg agagatgcct ctgttttcct tctttgtggc tgaagtttga gagagaggcc
     3481 tgtgctgagc tttctggaag acttgccctc ctgctgctgt gggcccagtc tctgacaccc
     3541 gcctgggatt caggtcatat ccaccgccac ttcaaggtgg gctgcttgct ttaaagccct
     3601 ttgatactct gacgaaagcc tatgtcccat ttgaggtgcc gaccaattca agtgccagct
     3661 gggccctttg tttatgattg gctcacgttt ccgagtgaat ttctttccgg agacgacatc
     3721 ctatgagtca cctttgaaat gagaatttat cggcttaggg tcaggataag tgtagccatc
     3781 tgagggcccg tttcagtagt atgggtctgt attaaagata gaggtgcgtc ctcccacacg
     3841 ctcagcccct gaagtctgtt gccttctcca aaagaacaac atctctcacc tgcttctttt
     3901 atctctatcc agctgcggac ctgacggtct tactgttacc caattaccag cttggagcct
     3961 aagtcttgag tttgatttgg aaatgttctg ccaacacgca tgctctttct gctaaaaaac
     4021 caaaccaaac caaataaaac aaaacatgga gacaggatgg atcggctctc tctgtgtctc
     4081 ctgtgtctcc ctcaacaccc ccagctgccc agggatcaga cagtctggcc gtgtcatact
     4141 taagacaaac aacaatgaat tctctctcct ttcctcttgg gcactgtgtt caggaggcag
     4201 tgaaaactgg tttctgcttc tttctttcct gggagttggg tattaggaga ggcccctcag
     4261 gatggtcctc ctgattatct acccttcact tgtctttact gtactcactg aaggcgctaa
     4321 gagtggagcg gtgggaattg gagggttctt ctttttaaaa acgtctttaa gattttcttt
     4381 ctctgtgggg aatggtatct cgagcaggac gtctggcaca agcatgatgg agcaggattg
     4441 gagtacacac acctcactgt tctgcttcga agtcctgact cagtcccacc tcgaggtgca
     4501 gagcctcctc ttgctcagtg gtgtgcagcg tccacttaga ttctcaggaa actgagtgac
     4561 tgctcggcca tttgtttgaa aacctgaatc tgcttgttgg actcaaacca gtcctgtcag
     4621 acttttctct gggcgtgggg acagtttaga gggatgagaa attatcctgg cgttacaacg
     4681 caaaaagatt ttctgctggt ttagtgctct ttgttcagtc ctggcagtgt ggttgtcagt
     4741 ggtgtggtgg tggcagtggt gtggtgtcag tggtgtggtg gtggcagtgg tgtggtggtg
     4801 g
//
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Reference sequence information

  • RefSeq alternative splicing
    See the other reference mRNA sequence splice variant for the RGD1562683 gene (NM_001108314.1).
  • RefSeq protein product
    See the reference protein sequence for uncharacterized protein LOC360700 isoform X1 (XP_063126684.1).

More about the RGD1562683 gene

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