LOCUS BC089791 2569 bp mRNA linear ROD 15-JUL-2006
DEFINITION Rattus norvegicus nuclear transcription factor-Y beta, mRNA (cDNA
clone MGC:108654 IMAGE:7380395), complete cds.
ACCESSION BC089791
VERSION BC089791.1
KEYWORDS MGC.
SOURCE Rattus norvegicus (Norway rat)
ORGANISM Rattus norvegicus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Rattus.
REFERENCE 1 (bases 1 to 2569)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2569)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-FEB-2005) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Drs. Josef Lazar & Howard Jacob, Medical
College of Wisconsin
cDNA Library Preparation: Open Biosystems
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 216 Row: k Column: 16
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 59709469.
FEATURES Location/Qualifiers
source 1..2569
/organism="Rattus norvegicus"
/mol_type="mRNA"
/db_xref="taxon:10116"
/clone="MGC:108654 IMAGE:7380395"
/tissue_type="Thymus, rat"
/clone_lib="NIH_MGC_250"
/lab_host="DH10B"
/note="Vector: pExpress1"
gene 1..2569
/gene="Nfyb"
/gene_synonym="CBF-B"
/gene_synonym="CBFB"
/gene_synonym="Nfya"
/db_xref="GeneID:25336"
/db_xref="RATMAP:41221"
/db_xref="RGD:3172"
CDS 214..837
/gene="Nfyb"
/gene_synonym="CBF-B"
/gene_synonym="CBFB"
/gene_synonym="Nfya"
/codon_start=1
/product="nuclear transcription factor-Y beta"
/protein_id="AAH89791.1"
/db_xref="GeneID:25336"
/db_xref="RATMAP:41221"
/db_xref="RGD:3172"
/translation="MTMDGDSSTTDASQLGISADYIGGSHYVIQPHDDTEDSMNDHED
TNGSKESFREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEAS
ERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKLYLQKFREAMKGEKGIGGAVSATDG
LSEELTEEAFTNQLPAGLITADGQQQNVMVYTTSYQQISGVQQIQFS"
ORIGIN
1 cggcccgcgg cggagggagg ggaggccgag tcctggaagt ggagctccgc gctgggactg
61 gttccttcgc agccattttc tgtccaacca aacagccgat tggagacggg agccaaccag
121 ggctgcattg gaggttaaaa ttggacaaag atccaccacc tttaggacag gtgttcaaga
181 accctgcaga taacacaatt ctgacagtat ttcatgacaa tggatggcga cagctctaca
241 acagatgctt ctcaactagg gatttctgca gactacatcg gaggaagtca ttatgtgatc
301 cagccccacg atgatactga ggacagcatg aatgatcatg aagatacaaa tggttcaaaa
361 gaaagtttca gagaacaaga tatttatctt cccattgcaa atgtggctag gataatgaaa
421 aatgccatac ctcaaacagg aaagattgca aaggatgcca aagaatgcgt tcaggagtgt
481 gtgagtgagt ttataagctt cataacatct gaagcaagtg agcgctgtca ccaggagaag
541 cggaagacca tcaacgggga ggacattctg ttcgccatgt ccactctcgg cttcgacagc
601 tacgtggagc ctctgaaact gtacctccag aagttcagag aggccatgaa gggagagaag
661 ggcattggtg gggccgtgtc tgctacagat ggactcagcg aggagctcac ggaagaggca
721 ttcactaacc agttaccggc tgggttaata actgcagatg gccaacaaca aaacgttatg
781 gtttacacga cgtcctatca acagatttct ggtgtccagc agattcagtt ttcatgatat
841 gaaggaagga tggagccggg ctgtgtggag agcgcgagcg agagtctgac ggagtctgga
901 gcagaggcat tgggaggaag tgagagtgag gccgcctcct tgtataataa gtagctgtaa
961 cgtagcttcc tgatgcctga ctaattgagg tgttaattct gacttgagaa tctttttcat
1021 gaatgatttt aaaagaaaaa aattggattt taaaggtatt aaaaatattt ttgttttgta
1081 cgagagtgtg ttgctctgtg acgcctgtat gcattgtata ttgcgattta ttactgtcag
1141 agatttgtag acagtttctt attttcatat tgaatcatgt tattttgtaa ttcaagtaag
1201 cagctgggtt aattcataat gtttattacc cttttaataa aatataaggg tagagttcat
1261 tttgaatgaa agttgccttt attacgaatt tgcgtttgtc ttagctatac actatcctgc
1321 atggtaactt agccgaatgt ttagcattta tttattgaaa acattttttt tttttttttg
1381 gtaaacagtc atagcttaag caacgtcatt tttttaactg aataattaag ttggatgcag
1441 aagcaagtgt tgcctggcct gtcagacctg gtgcctgttg ctgtctgtgc tgttgaggca
1501 gcttccgtta ctgccatgcc tgtgagaatt cctttccctt ccatacggtc ctgccacctc
1561 tgaaatggcc cctttcttct tcaagtatca cagtcccctt cctgaagagg gagttttcag
1621 tccactgata gtcatttccc ttcatggaaa ggtcaggtcc ctgtcgggct gtgggagccg
1681 agcagtgggc gtggttctgt gcagatgctg caggtgagag caagtgagcg gaggagcggt
1741 gaggcagggg agcagccagc acttggaatc aggagacacg gagccttttg gtgtgctgtc
1801 acaccatctg cagtaagcta gcattagttg atgtagcgtg gtttcttttt taaagtgaag
1861 atttctattt tctcatctag tctttttagt aatacttcct ttgaattttt gtgtatgtag
1921 tgtggtagtt ttagccctat caaaaatggc ttattgtata gtttgtccag aggaaatttt
1981 ggggctccag tggacaaaag caagcagttc cctaggtcca ggctgatcag taatggccac
2041 ttgccaagag tcttgtggaa cacagctagc tactctgaga ttaaataatt cccccttctc
2101 cttcctcctt tccttttcag tagtcacctt ctgtgtagga gatgcacata gggaagaacg
2161 ggaggtgacg gtcaagcaga accagcagtc gtcctactgt gctgaagtaa caatgttaat
2221 attttgataa ctcatttgtc cttttacttt gctaaatatg tatattttta taaagatggg
2281 ctcgtgttgt gcacactgtt ttgtaactcg tttttcactt aatacattgt gaacatcttt
2341 cccaggtcat gcatgatctt ctgcatcatt tttactgggt ttttattctg ttatatgact
2401 gaatcatgat taatttattt aattgcctat tgcacagttt gacctttttc catctcttca
2461 tagttataaa catagttata taagttcact gaatcttgtg tacatcgtaa cttttcttga
2521 aataaattct tagaagtaga aaaaaaaaaa aaaaaaaaaa aaaaaaaaa
//