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Rattus norvegicus nuclear transcription factor-Y beta, mRNA (cDNA clone MGC:108654 IMAGE:7380395), complete cds

GenBank: BC089791.1

FASTA Graphics 

LOCUS       BC089791                2569 bp    mRNA    linear   ROD 15-JUL-2006
DEFINITION  Rattus norvegicus nuclear transcription factor-Y beta, mRNA (cDNA
            clone MGC:108654 IMAGE:7380395), complete cds.
ACCESSION   BC089791
VERSION     BC089791.1
KEYWORDS    MGC.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2569)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
   PUBMED   12477932
REFERENCE   2  (bases 1 to 2569)
  CONSRTM   NIH MGC Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-FEB-2005) National Institutes of Health, Mammalian
            Gene Collection (MGC), Bethesda, MD 20892-2590, USA
  REMARK    NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT     Contact: MGC help desk
            Email: cgapbs-r@mail.nih.gov
            Tissue Procurement: Drs. Josef Lazar  & Howard Jacob, Medical
            College of Wisconsin
            cDNA Library Preparation: Open Biosystems
            cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
            DNA Sequencing by: Sequencing Group at the Stanford Human Genome
            Center, Stanford University School of Medicine, Stanford, CA  94305
            Web site:       http://www-shgc.stanford.edu
            Contact:  (Dickson, Mark) mcd@paxil.stanford.edu
            Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
            R. M.
            
            Clone distribution: MGC clone distribution information can be found
            through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
            Series: IRAK Plate: 216 Row: k Column: 16
            This clone was selected for full length sequencing because it
            passed the following selection criteria: matched mRNA gi: 59709469.
FEATURES             Location/Qualifiers
     source          1..2569
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /clone="MGC:108654 IMAGE:7380395"
                     /tissue_type="Thymus, rat"
                     /clone_lib="NIH_MGC_250"
                     /lab_host="DH10B"
                     /note="Vector: pExpress1"
     gene            1..2569
                     /gene="Nfyb"
                     /gene_synonym="CBF-B"
                     /gene_synonym="CBFB"
                     /gene_synonym="Nfya"
                     /db_xref="GeneID:25336"
                     /db_xref="RATMAP:41221"
                     /db_xref="RGD:3172"
     CDS             214..837
                     /gene="Nfyb"
                     /gene_synonym="CBF-B"
                     /gene_synonym="CBFB"
                     /gene_synonym="Nfya"
                     /codon_start=1
                     /product="nuclear transcription factor-Y beta"
                     /protein_id="AAH89791.1"
                     /db_xref="GeneID:25336"
                     /db_xref="RATMAP:41221"
                     /db_xref="RGD:3172"
                     /translation="MTMDGDSSTTDASQLGISADYIGGSHYVIQPHDDTEDSMNDHED
                     TNGSKESFREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEAS
                     ERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKLYLQKFREAMKGEKGIGGAVSATDG
                     LSEELTEEAFTNQLPAGLITADGQQQNVMVYTTSYQQISGVQQIQFS"
ORIGIN      
        1 cggcccgcgg cggagggagg ggaggccgag tcctggaagt ggagctccgc gctgggactg
       61 gttccttcgc agccattttc tgtccaacca aacagccgat tggagacggg agccaaccag
      121 ggctgcattg gaggttaaaa ttggacaaag atccaccacc tttaggacag gtgttcaaga
      181 accctgcaga taacacaatt ctgacagtat ttcatgacaa tggatggcga cagctctaca
      241 acagatgctt ctcaactagg gatttctgca gactacatcg gaggaagtca ttatgtgatc
      301 cagccccacg atgatactga ggacagcatg aatgatcatg aagatacaaa tggttcaaaa
      361 gaaagtttca gagaacaaga tatttatctt cccattgcaa atgtggctag gataatgaaa
      421 aatgccatac ctcaaacagg aaagattgca aaggatgcca aagaatgcgt tcaggagtgt
      481 gtgagtgagt ttataagctt cataacatct gaagcaagtg agcgctgtca ccaggagaag
      541 cggaagacca tcaacgggga ggacattctg ttcgccatgt ccactctcgg cttcgacagc
      601 tacgtggagc ctctgaaact gtacctccag aagttcagag aggccatgaa gggagagaag
      661 ggcattggtg gggccgtgtc tgctacagat ggactcagcg aggagctcac ggaagaggca
      721 ttcactaacc agttaccggc tgggttaata actgcagatg gccaacaaca aaacgttatg
      781 gtttacacga cgtcctatca acagatttct ggtgtccagc agattcagtt ttcatgatat
      841 gaaggaagga tggagccggg ctgtgtggag agcgcgagcg agagtctgac ggagtctgga
      901 gcagaggcat tgggaggaag tgagagtgag gccgcctcct tgtataataa gtagctgtaa
      961 cgtagcttcc tgatgcctga ctaattgagg tgttaattct gacttgagaa tctttttcat
     1021 gaatgatttt aaaagaaaaa aattggattt taaaggtatt aaaaatattt ttgttttgta
     1081 cgagagtgtg ttgctctgtg acgcctgtat gcattgtata ttgcgattta ttactgtcag
     1141 agatttgtag acagtttctt attttcatat tgaatcatgt tattttgtaa ttcaagtaag
     1201 cagctgggtt aattcataat gtttattacc cttttaataa aatataaggg tagagttcat
     1261 tttgaatgaa agttgccttt attacgaatt tgcgtttgtc ttagctatac actatcctgc
     1321 atggtaactt agccgaatgt ttagcattta tttattgaaa acattttttt tttttttttg
     1381 gtaaacagtc atagcttaag caacgtcatt tttttaactg aataattaag ttggatgcag
     1441 aagcaagtgt tgcctggcct gtcagacctg gtgcctgttg ctgtctgtgc tgttgaggca
     1501 gcttccgtta ctgccatgcc tgtgagaatt cctttccctt ccatacggtc ctgccacctc
     1561 tgaaatggcc cctttcttct tcaagtatca cagtcccctt cctgaagagg gagttttcag
     1621 tccactgata gtcatttccc ttcatggaaa ggtcaggtcc ctgtcgggct gtgggagccg
     1681 agcagtgggc gtggttctgt gcagatgctg caggtgagag caagtgagcg gaggagcggt
     1741 gaggcagggg agcagccagc acttggaatc aggagacacg gagccttttg gtgtgctgtc
     1801 acaccatctg cagtaagcta gcattagttg atgtagcgtg gtttcttttt taaagtgaag
     1861 atttctattt tctcatctag tctttttagt aatacttcct ttgaattttt gtgtatgtag
     1921 tgtggtagtt ttagccctat caaaaatggc ttattgtata gtttgtccag aggaaatttt
     1981 ggggctccag tggacaaaag caagcagttc cctaggtcca ggctgatcag taatggccac
     2041 ttgccaagag tcttgtggaa cacagctagc tactctgaga ttaaataatt cccccttctc
     2101 cttcctcctt tccttttcag tagtcacctt ctgtgtagga gatgcacata gggaagaacg
     2161 ggaggtgacg gtcaagcaga accagcagtc gtcctactgt gctgaagtaa caatgttaat
     2221 attttgataa ctcatttgtc cttttacttt gctaaatatg tatattttta taaagatggg
     2281 ctcgtgttgt gcacactgtt ttgtaactcg tttttcactt aatacattgt gaacatcttt
     2341 cccaggtcat gcatgatctt ctgcatcatt tttactgggt ttttattctg ttatatgact
     2401 gaatcatgat taatttattt aattgcctat tgcacagttt gacctttttc catctcttca
     2461 tagttataaa catagttata taagttcact gaatcttgtg tacatcgtaa cttttcttga
     2521 aataaattct tagaagtaga aaaaaaaaaa aaaaaaaaaa aaaaaaaaa
//
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