LOCUS NM_001434291 3216 bp mRNA linear ROD 24-OCT-2024
DEFINITION Rattus norvegicus far upstream element binding protein 3 (Fubp3),
transcript variant 1, mRNA.
ACCESSION NM_001434291 XM_006233922
VERSION NM_001434291.1
KEYWORDS RefSeq.
SOURCE Rattus norvegicus (Norway rat)
ORGANISM Rattus norvegicus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Rattus.
REFERENCE 1 (bases 1 to 3216)
AUTHORS Zivraj,K.H., Rehbein,M., Olschlager-Schutt,J., Schob,C., Falley,K.,
Buck,F., Schweizer,M., Schepis,A., Kremmer,E., Richter,D.,
Kreienkamp,H.J. and Kindler,S.
TITLE The RNA-binding protein MARTA2 regulates dendritic targeting of
MAP2 mRNAs in rat neurons
JOURNAL J Neurochem 124 (5), 670-684 (2013)
PUBMED 23121659
REMARK GeneRIF: in neurons MARTA2 appears to represent a key trans-acting
factor involved in dendritic targeting of MAP2 mRNAs.
REFERENCE 2 (bases 1 to 3216)
AUTHORS Baltz,A.G., Munschauer,M., Schwanhausser,B., Vasile,A.,
Murakawa,Y., Schueler,M., Youngs,N., Penfold-Brown,D., Drew,K.,
Milek,M., Wyler,E., Bonneau,R., Selbach,M., Dieterich,C. and
Landthaler,M.
TITLE The mRNA-bound proteome and its global occupancy profile on
protein-coding transcripts
JOURNAL Mol Cell 46 (5), 674-690 (2012)
PUBMED 22681889
REFERENCE 3 (bases 1 to 3216)
AUTHORS Castello,A., Fischer,B., Eichelbaum,K., Horos,R., Beckmann,B.M.,
Strein,C., Davey,N.E., Humphreys,D.T., Preiss,T., Steinmetz,L.M.,
Krijgsveld,J. and Hentze,M.W.
TITLE Insights into RNA biology from an atlas of mammalian mRNA-binding
proteins
JOURNAL Cell 149 (6), 1393-1406 (2012)
PUBMED 22658674
REFERENCE 4 (bases 1 to 3216)
AUTHORS Ghosh,D., Lippert,D., Krokhin,O., Cortens,J.P. and Wilkins,J.A.
TITLE Defining the membrane proteome of NK cells
JOURNAL J Mass Spectrom 45 (1), 1-25 (2010)
PUBMED 19946888
REFERENCE 5 (bases 1 to 3216)
AUTHORS Weber,A., Kristiansen,I., Johannsen,M., Oelrich,B., Scholmann,K.,
Gunia,S., May,M., Meyer,H.A., Behnke,S., Moch,H. and Kristiansen,G.
TITLE The FUSE binding proteins FBP1 and FBP3 are potential c-myc
regulators in renal, but not in prostate and bladder cancer
JOURNAL BMC Cancer 8, 369 (2008)
PUBMED 19087307
REMARK Publication Status: Online-Only
REFERENCE 6 (bases 1 to 3216)
AUTHORS Davis-Smyth,T., Duncan,R.C., Zheng,T., Michelotti,G. and Levens,D.
TITLE The far upstream element-binding proteins comprise an ancient
family of single-strand DNA-binding transactivators
JOURNAL J Biol Chem 271 (49), 31679-31687 (1996)
PUBMED 8940189
REFERENCE 7 (bases 1 to 3216)
AUTHORS Wu,C., Narayan,P. and Puett,D.
TITLE Protein engineering of a novel constitutively active
hormone-receptor complex
JOURNAL J Biol Chem 271 (49), 31638-31642 (1996)
PUBMED 8940183
COMMENT VALIDATED REFSEQ: This record has undergone validation or
preliminary review. The reference sequence was derived from
JAXUCZ010000003.1.
On Oct 24, 2024 this sequence version replaced XM_006233922.5.
##Evidence-Data-START##
Transcript exon combination :: SRR26643294.12699.1,
SRR26643429.11164.1 [ECO:0000332]
RNAseq introns :: single sample supports all introns
SAMEA5760383, SAMEA5760389
[ECO:0000348]
##Evidence-Data-END##
COMPLETENESS: full length.
PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
1-164 JAXUCZ010000003.1 35253300-35253463
165-270 JAXUCZ010000003.1 35268896-35269001
271-304 JAXUCZ010000003.1 35277481-35277514
305-354 JAXUCZ010000003.1 35279795-35279844
355-426 JAXUCZ010000003.1 35280210-35280281
427-484 JAXUCZ010000003.1 35281480-35281537
485-647 JAXUCZ010000003.1 35283445-35283607
648-746 JAXUCZ010000003.1 35285077-35285175
747-851 JAXUCZ010000003.1 35287412-35287516
852-954 JAXUCZ010000003.1 35288649-35288751
955-1055 JAXUCZ010000003.1 35289159-35289259
1056-1197 JAXUCZ010000003.1 35292018-35292159
1198-1358 JAXUCZ010000003.1 35295455-35295615
1359-1432 JAXUCZ010000003.1 35296361-35296434
1433-1504 JAXUCZ010000003.1 35296708-35296779
1505-1581 JAXUCZ010000003.1 35296907-35296983
1582-1653 JAXUCZ010000003.1 35298747-35298818
1654-1841 JAXUCZ010000003.1 35299560-35299747
1842-3216 JAXUCZ010000003.1 35300241-35301615
FEATURES Location/Qualifiers
source 1..3216
/organism="Rattus norvegicus"
/mol_type="mRNA"
/strain="BN"
/db_xref="taxon:10116"
/chromosome="3"
/map="3p12"
gene 1..3216
/gene="Fubp3"
/gene_synonym="Marta2"
/note="far upstream element binding protein 3"
/db_xref="GeneID:362106"
/db_xref="RGD:1307004"
exon 1..164
/gene="Fubp3"
/gene_synonym="Marta2"
/inference="alignment:Splign:2.1.0"
CDS 81..1808
/gene="Fubp3"
/gene_synonym="Marta2"
/note="isoform a is encoded by transcript variant 1; MAP2
RNA trans-acting protein 2; far upstream element (FUSE)
binding protein 3"
/codon_start=1
/product="far upstream element-binding protein 3 isoform
a"
/protein_id="NP_001421220.1"
/db_xref="GeneID:362106"
/db_xref="RGD:1307004"
/translation="MAELVQGQSAPVGLKAEDFVDALHRVRQIAAKIDSIPHLNNSTP
LVDPSVYGYGVQKRPLDDGVGNQLGALVHQRAVITEEFKVPDKMVGFIIGRGGEQISR
IQAESGCKIQIASESSGIPERPCVLTGTPESIEQAKRLLGQIVDRCRNGPGFHNDIDG
NSTIQELLIPASKVGLVIGKGGETIKQLQERTGVKMVMIQDGPLPTGADKPLRITGDP
FKVQQAREMVLEIIREKDQADFRGVRSDFTSRAGGGSIEVSVPRFVVGIVIGRNGEMI
KKIQNDAGVRIQFKPDDGISPERAAQVMGPPDRCQHAARIINELILTAQEREILGGLT
GTRGRGRGRGDWSVGTPGGIQEITYTVPADKCGLVIGKGGENIKSINQQSGAHVELQR
NPPPNTDPNLRIFTIRGAPQQIEVARHLIDEKVGGASLGAPTAFGQSPFSQPPAAPHQ
NTFPPRAFPNIAAKVNGNPHSTPVSGPPAFLTQGWGSTYQAWQQPTQQVPSQQSQPQN
SQPDYSKAWEDYYKKQGHTTSAAPQASSPPDYTMAWAEYYRQQAAFYGQTLGQAQAHS
QVCSQSPAP"
exon 165..270
/gene="Fubp3"
/gene_synonym="Marta2"
/inference="alignment:Splign:2.1.0"
exon 271..304
/gene="Fubp3"
/gene_synonym="Marta2"
/inference="alignment:Splign:2.1.0"
exon 305..354
/gene="Fubp3"
/gene_synonym="Marta2"
/inference="alignment:Splign:2.1.0"
exon 355..426
/gene="Fubp3"
/gene_synonym="Marta2"
/inference="alignment:Splign:2.1.0"
exon 427..484
/gene="Fubp3"
/gene_synonym="Marta2"
/inference="alignment:Splign:2.1.0"
exon 485..647
/gene="Fubp3"
/gene_synonym="Marta2"
/inference="alignment:Splign:2.1.0"
exon 648..746
/gene="Fubp3"
/gene_synonym="Marta2"
/inference="alignment:Splign:2.1.0"
exon 747..851
/gene="Fubp3"
/gene_synonym="Marta2"
/inference="alignment:Splign:2.1.0"
exon 852..954
/gene="Fubp3"
/gene_synonym="Marta2"
/inference="alignment:Splign:2.1.0"
exon 955..1055
/gene="Fubp3"
/gene_synonym="Marta2"
/inference="alignment:Splign:2.1.0"
exon 1056..1197
/gene="Fubp3"
/gene_synonym="Marta2"
/inference="alignment:Splign:2.1.0"
exon 1198..1358
/gene="Fubp3"
/gene_synonym="Marta2"
/inference="alignment:Splign:2.1.0"
exon 1359..1432
/gene="Fubp3"
/gene_synonym="Marta2"
/inference="alignment:Splign:2.1.0"
exon 1433..1504
/gene="Fubp3"
/gene_synonym="Marta2"
/inference="alignment:Splign:2.1.0"
exon 1505..1581
/gene="Fubp3"
/gene_synonym="Marta2"
/inference="alignment:Splign:2.1.0"
exon 1582..1653
/gene="Fubp3"
/gene_synonym="Marta2"
/inference="alignment:Splign:2.1.0"
exon 1654..1841
/gene="Fubp3"
/gene_synonym="Marta2"
/inference="alignment:Splign:2.1.0"
exon 1842..3216
/gene="Fubp3"
/gene_synonym="Marta2"
/inference="alignment:Splign:2.1.0"
ORIGIN
1 ctttccggct acgggtcccg gagcggagtg ggaggccgga ccggggaagc cgagcgacgg
61 cggtggcggt ggggttggcc atggcggagc tggtgcaggg gcagagcgct ccggtgggct
121 tgaaggctga ggacttcgtg gatgccctgc accgggtccg gcagattgct gctaaaatcg
181 attcaattcc tcacttgaat aattccacac ccctggtgga cccctccgtg tacggatacg
241 gagtacagaa acggcccttg gacgatggag taggtaacca gttaggggcc ttggtacatc
301 aaagggcagt aataacagaa gaattcaagg tgcctgataa aatggttgga tttattattg
361 gcaggggagg tgagcagatt tcacgaattc aagcagaatc tgggtgcaaa atccagattg
421 cctcagagag ttctgggatt ccagagaggc cctgtgtact taccggaacc ccagaaagta
481 ttgaacaagc caaacggctc ctggggcaga ttgtggaccg atgtcggaat gggcctggct
541 ttcacaacga tatagatggc aacagcacaa tccaggagct tcttatccct gcatctaaag
601 tggggctggt catcggcaaa ggaggggaaa caatcaagca gttgcaggag cggacaggtg
661 tgaaaatggt catgatccag gatggcccgc tacccacagg agcagacaag cctctccgca
721 tcactggaga tccatttaaa gtacagcaag caagagaaat ggtcttagaa atcatccgag
781 agaaagacca ggctgacttc cggggcgtgc gcagtgactt cacctcccga gcgggaggag
841 gtagtataga ggtgtctgtg cctaggtttg ttgttgggat tgtcatagga agaaacggag
901 aaatgattaa gaagatccag aatgatgctg gtgtgaggat ccagttcaaa ccagacgacg
961 ggattagtcc agaaagagca gcacaggtca tgggccctcc agatcggtgt cagcatgcag
1021 cacgcatcat caatgagctc atcctcacgg cacaggaaag agagatcctt ggaggcctca
1081 cgggaacaag aggaagaggc cgaggccgtg gtgattggag tgtgggcact cctggtggca
1141 tccaggaaat tacatacaca gtgccagctg ataaatgcgg cctcgtgata ggcaaagggg
1201 gcgagaacat caaaagcatc aaccagcaat caggtgccca cgtggagctg cagcggaacc
1261 cccctcctaa caccgaccct aacctgcgga tatttaccat caggggtgct cctcagcaga
1321 tcgaggtggc caggcatctc atagatgaga aagttggcgg tgccagcctc ggagccccta
1381 cagccttcgg acagagcccc ttcagccagc caccagctgc accacatcaa aacacctttc
1441 cccccagggc cttccccaac atcgctgcta aagttaacgg gaacccccac agcacccctg
1501 tgagcggccc tccagctttt ctgacccaag gctggggcag cacttaccag gcttggcagc
1561 agcctacaca gcaagtccca agccagcaga gccagccaca gaacagccag cccgactaca
1621 gcaaggcctg ggaagactat tacaaaaaac agggtcacac caccagtgct gccccacagg
1681 ccagctcccc cccagactac acgatggcct gggccgagta ctacaggcag caggccgcct
1741 tctatgggca gactttaggg caggctcagg cccacagcca ggtctgtagc cagtccccag
1801 caccgtgatg ccacccagcc ttgtgctttc ctagtcccag ggagcagtag atgggcatct
1861 gccgcggctc ttccccgaaa tcagtgtgag agaaacctgt ttgttacaga gatttttaga
1921 tttgcaaacc tttcgatgaa gacctttgtt ttgttctgtg aaacactata tttagattaa
1981 cagaaatttt ctaaaaatta ggaaaattag ttactaaaca ttggtaattt ttgtgtcatg
2041 atttctttgt aaatgtgtaa gctctggagc tcttttggag caaaacctgc aagctcaggt
2101 gccggaactc tcctcagagc ctgacatttc atcaaatgat gggtttgtct tgtgtctttt
2161 tatttacagt tttgggtggt tttttttgtt tttttgtttt tttgtttttt tgtttttttg
2221 tttttttttg ttggtttttt gttgggtttg ggggggtttg gttttttgtt ttgttttgtt
2281 ttttgttttt ttgttttttt ctgttacaac agaaaaaatg gcttggaagt cttaggtggt
2341 aatgtaacaa attctttaaa aatttttaag cagtatttaa atattcataa atgtaaattc
2401 attaagtgtt tcacctctaa tttcttgtat cttggctgtc tggttttatt gcatttttta
2461 aaaaactgaa ctattatgta ttgtaattaa tgatgtgaat tttgaactga gacgggtcct
2521 tgtgttgtgg agggtcagtc gtgggctgta tcatttctag cgtttggatg gtgatacgga
2581 gatgctgtcc accttcctgt aagctgcccg tctccattgc ccagggcggt tgtgtgtcta
2641 agacctccaa gctggtttta aaaacaaaaa gcctttctct attctcagaa atataaatac
2701 tgttattttt aatattaaaa agaaattgaa tataacttta acacacactg tggacattaa
2761 accatataaa aatgtagtga ctatttttta attccaggtg ttttttgctt ttttccttaa
2821 atattttctt aatatttgtc aaattaacta gataaataaa taaatctagt attaaccaca
2881 gtatgagtta aataattttg atttaataaa agggatgatt tccaatgttt actgtagtgt
2941 aacttgtaca gataacatgt atttttaaag aaaagacgaa attgacgcta ttttctcttg
3001 cgttttgaat tgacctgagg aacgctcgtt tgaaacgcgc tcgtcccagt ttgcggttcc
3061 tgttctcctc gcagtgcttg caatgtctaa ccattaaaca gcattggaca tgttatgcat
3121 gtggttgttt tttaaaggtg ttctttttat ttgactgaca attcatttta cactctatat
3181 aataaaattt ccacaagaca tcttgtgggc aaagtg
//