U.S. flag

An official website of the United States government

Rattus norvegicus far upstream element binding protein 3 (Fubp3), transcript variant 1, mRNA

NCBI Reference Sequence: NM_001434291.1

FASTA Graphics 

LOCUS       NM_001434291            3216 bp    mRNA    linear   ROD 24-OCT-2024
DEFINITION  Rattus norvegicus far upstream element binding protein 3 (Fubp3),
            transcript variant 1, mRNA.
ACCESSION   NM_001434291 XM_006233922
VERSION     NM_001434291.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3216)
  AUTHORS   Zivraj,K.H., Rehbein,M., Olschlager-Schutt,J., Schob,C., Falley,K.,
            Buck,F., Schweizer,M., Schepis,A., Kremmer,E., Richter,D.,
            Kreienkamp,H.J. and Kindler,S.
  TITLE     The RNA-binding protein MARTA2 regulates dendritic targeting of
            MAP2 mRNAs in rat neurons
  JOURNAL   J Neurochem 124 (5), 670-684 (2013)
   PUBMED   23121659
  REMARK    GeneRIF: in neurons MARTA2 appears to represent a key trans-acting
            factor involved in dendritic targeting of MAP2 mRNAs.
REFERENCE   2  (bases 1 to 3216)
  AUTHORS   Baltz,A.G., Munschauer,M., Schwanhausser,B., Vasile,A.,
            Murakawa,Y., Schueler,M., Youngs,N., Penfold-Brown,D., Drew,K.,
            Milek,M., Wyler,E., Bonneau,R., Selbach,M., Dieterich,C. and
            Landthaler,M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
REFERENCE   3  (bases 1 to 3216)
  AUTHORS   Castello,A., Fischer,B., Eichelbaum,K., Horos,R., Beckmann,B.M.,
            Strein,C., Davey,N.E., Humphreys,D.T., Preiss,T., Steinmetz,L.M.,
            Krijgsveld,J. and Hentze,M.W.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
REFERENCE   4  (bases 1 to 3216)
  AUTHORS   Ghosh,D., Lippert,D., Krokhin,O., Cortens,J.P. and Wilkins,J.A.
  TITLE     Defining the membrane proteome of NK cells
  JOURNAL   J Mass Spectrom 45 (1), 1-25 (2010)
   PUBMED   19946888
REFERENCE   5  (bases 1 to 3216)
  AUTHORS   Weber,A., Kristiansen,I., Johannsen,M., Oelrich,B., Scholmann,K.,
            Gunia,S., May,M., Meyer,H.A., Behnke,S., Moch,H. and Kristiansen,G.
  TITLE     The FUSE binding proteins FBP1 and FBP3 are potential c-myc
            regulators in renal, but not in prostate and bladder cancer
  JOURNAL   BMC Cancer 8, 369 (2008)
   PUBMED   19087307
  REMARK    Publication Status: Online-Only
REFERENCE   6  (bases 1 to 3216)
  AUTHORS   Davis-Smyth,T., Duncan,R.C., Zheng,T., Michelotti,G. and Levens,D.
  TITLE     The far upstream element-binding proteins comprise an ancient
            family of single-strand DNA-binding transactivators
  JOURNAL   J Biol Chem 271 (49), 31679-31687 (1996)
   PUBMED   8940189
REFERENCE   7  (bases 1 to 3216)
  AUTHORS   Wu,C., Narayan,P. and Puett,D.
  TITLE     Protein engineering of a novel constitutively active
            hormone-receptor complex
  JOURNAL   J Biol Chem 271 (49), 31638-31642 (1996)
   PUBMED   8940183
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000003.1.
            
            On Oct 24, 2024 this sequence version replaced XM_006233922.5.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643294.12699.1,
                                           SRR26643429.11164.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-164               JAXUCZ010000003.1  35253300-35253463
            165-270             JAXUCZ010000003.1  35268896-35269001
            271-304             JAXUCZ010000003.1  35277481-35277514
            305-354             JAXUCZ010000003.1  35279795-35279844
            355-426             JAXUCZ010000003.1  35280210-35280281
            427-484             JAXUCZ010000003.1  35281480-35281537
            485-647             JAXUCZ010000003.1  35283445-35283607
            648-746             JAXUCZ010000003.1  35285077-35285175
            747-851             JAXUCZ010000003.1  35287412-35287516
            852-954             JAXUCZ010000003.1  35288649-35288751
            955-1055            JAXUCZ010000003.1  35289159-35289259
            1056-1197           JAXUCZ010000003.1  35292018-35292159
            1198-1358           JAXUCZ010000003.1  35295455-35295615
            1359-1432           JAXUCZ010000003.1  35296361-35296434
            1433-1504           JAXUCZ010000003.1  35296708-35296779
            1505-1581           JAXUCZ010000003.1  35296907-35296983
            1582-1653           JAXUCZ010000003.1  35298747-35298818
            1654-1841           JAXUCZ010000003.1  35299560-35299747
            1842-3216           JAXUCZ010000003.1  35300241-35301615
FEATURES             Location/Qualifiers
     source          1..3216
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3p12"
     gene            1..3216
                     /gene="Fubp3"
                     /gene_synonym="Marta2"
                     /note="far upstream element binding protein 3"
                     /db_xref="GeneID:362106"
                     /db_xref="RGD:1307004"
     exon            1..164
                     /gene="Fubp3"
                     /gene_synonym="Marta2"
                     /inference="alignment:Splign:2.1.0"
     CDS             81..1808
                     /gene="Fubp3"
                     /gene_synonym="Marta2"
                     /note="isoform a is encoded by transcript variant 1; MAP2
                     RNA trans-acting protein 2; far upstream element (FUSE)
                     binding protein 3"
                     /codon_start=1
                     /product="far upstream element-binding protein 3 isoform
                     a"
                     /protein_id="NP_001421220.1"
                     /db_xref="GeneID:362106"
                     /db_xref="RGD:1307004"
                     /translation="MAELVQGQSAPVGLKAEDFVDALHRVRQIAAKIDSIPHLNNSTP
                     LVDPSVYGYGVQKRPLDDGVGNQLGALVHQRAVITEEFKVPDKMVGFIIGRGGEQISR
                     IQAESGCKIQIASESSGIPERPCVLTGTPESIEQAKRLLGQIVDRCRNGPGFHNDIDG
                     NSTIQELLIPASKVGLVIGKGGETIKQLQERTGVKMVMIQDGPLPTGADKPLRITGDP
                     FKVQQAREMVLEIIREKDQADFRGVRSDFTSRAGGGSIEVSVPRFVVGIVIGRNGEMI
                     KKIQNDAGVRIQFKPDDGISPERAAQVMGPPDRCQHAARIINELILTAQEREILGGLT
                     GTRGRGRGRGDWSVGTPGGIQEITYTVPADKCGLVIGKGGENIKSINQQSGAHVELQR
                     NPPPNTDPNLRIFTIRGAPQQIEVARHLIDEKVGGASLGAPTAFGQSPFSQPPAAPHQ
                     NTFPPRAFPNIAAKVNGNPHSTPVSGPPAFLTQGWGSTYQAWQQPTQQVPSQQSQPQN
                     SQPDYSKAWEDYYKKQGHTTSAAPQASSPPDYTMAWAEYYRQQAAFYGQTLGQAQAHS
                     QVCSQSPAP"
     exon            165..270
                     /gene="Fubp3"
                     /gene_synonym="Marta2"
                     /inference="alignment:Splign:2.1.0"
     exon            271..304
                     /gene="Fubp3"
                     /gene_synonym="Marta2"
                     /inference="alignment:Splign:2.1.0"
     exon            305..354
                     /gene="Fubp3"
                     /gene_synonym="Marta2"
                     /inference="alignment:Splign:2.1.0"
     exon            355..426
                     /gene="Fubp3"
                     /gene_synonym="Marta2"
                     /inference="alignment:Splign:2.1.0"
     exon            427..484
                     /gene="Fubp3"
                     /gene_synonym="Marta2"
                     /inference="alignment:Splign:2.1.0"
     exon            485..647
                     /gene="Fubp3"
                     /gene_synonym="Marta2"
                     /inference="alignment:Splign:2.1.0"
     exon            648..746
                     /gene="Fubp3"
                     /gene_synonym="Marta2"
                     /inference="alignment:Splign:2.1.0"
     exon            747..851
                     /gene="Fubp3"
                     /gene_synonym="Marta2"
                     /inference="alignment:Splign:2.1.0"
     exon            852..954
                     /gene="Fubp3"
                     /gene_synonym="Marta2"
                     /inference="alignment:Splign:2.1.0"
     exon            955..1055
                     /gene="Fubp3"
                     /gene_synonym="Marta2"
                     /inference="alignment:Splign:2.1.0"
     exon            1056..1197
                     /gene="Fubp3"
                     /gene_synonym="Marta2"
                     /inference="alignment:Splign:2.1.0"
     exon            1198..1358
                     /gene="Fubp3"
                     /gene_synonym="Marta2"
                     /inference="alignment:Splign:2.1.0"
     exon            1359..1432
                     /gene="Fubp3"
                     /gene_synonym="Marta2"
                     /inference="alignment:Splign:2.1.0"
     exon            1433..1504
                     /gene="Fubp3"
                     /gene_synonym="Marta2"
                     /inference="alignment:Splign:2.1.0"
     exon            1505..1581
                     /gene="Fubp3"
                     /gene_synonym="Marta2"
                     /inference="alignment:Splign:2.1.0"
     exon            1582..1653
                     /gene="Fubp3"
                     /gene_synonym="Marta2"
                     /inference="alignment:Splign:2.1.0"
     exon            1654..1841
                     /gene="Fubp3"
                     /gene_synonym="Marta2"
                     /inference="alignment:Splign:2.1.0"
     exon            1842..3216
                     /gene="Fubp3"
                     /gene_synonym="Marta2"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ctttccggct acgggtcccg gagcggagtg ggaggccgga ccggggaagc cgagcgacgg
       61 cggtggcggt ggggttggcc atggcggagc tggtgcaggg gcagagcgct ccggtgggct
      121 tgaaggctga ggacttcgtg gatgccctgc accgggtccg gcagattgct gctaaaatcg
      181 attcaattcc tcacttgaat aattccacac ccctggtgga cccctccgtg tacggatacg
      241 gagtacagaa acggcccttg gacgatggag taggtaacca gttaggggcc ttggtacatc
      301 aaagggcagt aataacagaa gaattcaagg tgcctgataa aatggttgga tttattattg
      361 gcaggggagg tgagcagatt tcacgaattc aagcagaatc tgggtgcaaa atccagattg
      421 cctcagagag ttctgggatt ccagagaggc cctgtgtact taccggaacc ccagaaagta
      481 ttgaacaagc caaacggctc ctggggcaga ttgtggaccg atgtcggaat gggcctggct
      541 ttcacaacga tatagatggc aacagcacaa tccaggagct tcttatccct gcatctaaag
      601 tggggctggt catcggcaaa ggaggggaaa caatcaagca gttgcaggag cggacaggtg
      661 tgaaaatggt catgatccag gatggcccgc tacccacagg agcagacaag cctctccgca
      721 tcactggaga tccatttaaa gtacagcaag caagagaaat ggtcttagaa atcatccgag
      781 agaaagacca ggctgacttc cggggcgtgc gcagtgactt cacctcccga gcgggaggag
      841 gtagtataga ggtgtctgtg cctaggtttg ttgttgggat tgtcatagga agaaacggag
      901 aaatgattaa gaagatccag aatgatgctg gtgtgaggat ccagttcaaa ccagacgacg
      961 ggattagtcc agaaagagca gcacaggtca tgggccctcc agatcggtgt cagcatgcag
     1021 cacgcatcat caatgagctc atcctcacgg cacaggaaag agagatcctt ggaggcctca
     1081 cgggaacaag aggaagaggc cgaggccgtg gtgattggag tgtgggcact cctggtggca
     1141 tccaggaaat tacatacaca gtgccagctg ataaatgcgg cctcgtgata ggcaaagggg
     1201 gcgagaacat caaaagcatc aaccagcaat caggtgccca cgtggagctg cagcggaacc
     1261 cccctcctaa caccgaccct aacctgcgga tatttaccat caggggtgct cctcagcaga
     1321 tcgaggtggc caggcatctc atagatgaga aagttggcgg tgccagcctc ggagccccta
     1381 cagccttcgg acagagcccc ttcagccagc caccagctgc accacatcaa aacacctttc
     1441 cccccagggc cttccccaac atcgctgcta aagttaacgg gaacccccac agcacccctg
     1501 tgagcggccc tccagctttt ctgacccaag gctggggcag cacttaccag gcttggcagc
     1561 agcctacaca gcaagtccca agccagcaga gccagccaca gaacagccag cccgactaca
     1621 gcaaggcctg ggaagactat tacaaaaaac agggtcacac caccagtgct gccccacagg
     1681 ccagctcccc cccagactac acgatggcct gggccgagta ctacaggcag caggccgcct
     1741 tctatgggca gactttaggg caggctcagg cccacagcca ggtctgtagc cagtccccag
     1801 caccgtgatg ccacccagcc ttgtgctttc ctagtcccag ggagcagtag atgggcatct
     1861 gccgcggctc ttccccgaaa tcagtgtgag agaaacctgt ttgttacaga gatttttaga
     1921 tttgcaaacc tttcgatgaa gacctttgtt ttgttctgtg aaacactata tttagattaa
     1981 cagaaatttt ctaaaaatta ggaaaattag ttactaaaca ttggtaattt ttgtgtcatg
     2041 atttctttgt aaatgtgtaa gctctggagc tcttttggag caaaacctgc aagctcaggt
     2101 gccggaactc tcctcagagc ctgacatttc atcaaatgat gggtttgtct tgtgtctttt
     2161 tatttacagt tttgggtggt tttttttgtt tttttgtttt tttgtttttt tgtttttttg
     2221 tttttttttg ttggtttttt gttgggtttg ggggggtttg gttttttgtt ttgttttgtt
     2281 ttttgttttt ttgttttttt ctgttacaac agaaaaaatg gcttggaagt cttaggtggt
     2341 aatgtaacaa attctttaaa aatttttaag cagtatttaa atattcataa atgtaaattc
     2401 attaagtgtt tcacctctaa tttcttgtat cttggctgtc tggttttatt gcatttttta
     2461 aaaaactgaa ctattatgta ttgtaattaa tgatgtgaat tttgaactga gacgggtcct
     2521 tgtgttgtgg agggtcagtc gtgggctgta tcatttctag cgtttggatg gtgatacgga
     2581 gatgctgtcc accttcctgt aagctgcccg tctccattgc ccagggcggt tgtgtgtcta
     2641 agacctccaa gctggtttta aaaacaaaaa gcctttctct attctcagaa atataaatac
     2701 tgttattttt aatattaaaa agaaattgaa tataacttta acacacactg tggacattaa
     2761 accatataaa aatgtagtga ctatttttta attccaggtg ttttttgctt ttttccttaa
     2821 atattttctt aatatttgtc aaattaacta gataaataaa taaatctagt attaaccaca
     2881 gtatgagtta aataattttg atttaataaa agggatgatt tccaatgttt actgtagtgt
     2941 aacttgtaca gataacatgt atttttaaag aaaagacgaa attgacgcta ttttctcttg
     3001 cgttttgaat tgacctgagg aacgctcgtt tgaaacgcgc tcgtcccagt ttgcggttcc
     3061 tgttctcctc gcagtgcttg caatgtctaa ccattaaaca gcattggaca tgttatgcat
     3121 gtggttgttt tttaaaggtg ttctttttat ttgactgaca attcatttta cactctatat
     3181 aataaaattt ccacaagaca tcttgtgggc aaagtg
//
Feature
Display: FASTA GenBank Help
Details

Supplemental Content

Change region shown

Customize view

Reference sequence information

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
External link. Please review our privacy policy.