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PREDICTED: Rattus norvegicus solute carrier family 35 member B3 (Slc35b3), transcript variant X3, mRNA

NCBI Reference Sequence: XM_006253850.3

FASTA Graphics 

LOCUS       XM_006253850            1932 bp    mRNA    linear   ROD 22-FEB-2024
DEFINITION  PREDICTED: Rattus norvegicus solute carrier family 35 member B3
            (Slc35b3), transcript variant X3, mRNA.
ACCESSION   XM_006253850
VERSION     XM_006253850.3
DBLINK      BioProject: PRJNA1074393
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086035) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Feb 22, 2024 this sequence version replaced XM_006253850.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1932
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="17"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     gene            1..1932
                     /gene="Slc35b3"
                     /note="solute carrier family 35 member B3; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 33 ESTs, 40 long SRA reads, 12 Proteins"
                     /db_xref="GeneID:306866"
                     /db_xref="RGD:1307183"
     CDS             220..1329
                     /gene="Slc35b3"
                     /codon_start=1
                     /product="adenosine 3'-phospho 5'-phosphosulfate
                     transporter 2 isoform X2"
                     /protein_id="XP_006253912.1"
                     /db_xref="GeneID:306866"
                     /db_xref="RGD:1307183"
                     /translation="MDLKFNNSRKYVSITVPSKTQTMSPHIKSVEDVVVLGVNLSRFK
                     KLTQFLICVAGVFVFYLIYGYLQELIFSMEGFKPYGWYLTLVQFAFYSVFGLIELQLT
                     QDKRRRIPGKTYMIIAFLTVGTMGLSNTSLGYLNYPTQVIFKCCKLIPVMLGGVFIQG
                     KRYNLADVSAAVCMSLGLIWFTLADSTIAPNFNLTGVMLISLALCADAVIGNVQEKAM
                     KLHNASNSEMVLYSYSIGFVYILLGLSCTSGLGPALAFCSKNPVRTYGYAFLFSLTGY
                     FGISFVLALIKIFGALLAVTVTTGRKAMTIVLSFLFFAKPFTFQYIWSGLLVVLGIFL
                     NVYSKNMDKIRLPSVYSVIKKAMDMKKSRTLAQTV"
     polyA_site      1932
                     /gene="Slc35b3"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 gagaccttcc gggaaggtgg cggccgaggt ggcggtcgag agagcaggac cggagacagg
       61 tggatgcgga ggaggtgaca gcggctgagc tgggaggggg ccttgccgcg cggtcaggcg
      121 tcgttaggca gcactcgggc ccagccagca agacggggcc cagcagtgga gaagagcaga
      181 gacaaggttg caggccttga atgcggcaaa gcagaaacca tggacctcaa gttcaacaac
      241 tccaggaagt atgtctccat cactgtgccc tccaaaaccc agacaatgtc gccacacatc
      301 aagtcggttg aggacgtcgt ggtgctgggc gtgaacctca gcaggtttaa gaagctcaca
      361 cagtttctca tatgtgtggc tggagttttt gtgttttacc taatttatgg atacttacag
      421 gagttgatat tttcaatgga aggctttaag ccttacggct ggtaccttac tttagtacag
      481 tttgcatttt actctgtatt tggcctaata gaactccagc tcactcagga caaaaggaga
      541 agaataccag gaaaaaccta catgataata gcttttctaa ctgtgggtac tatgggctta
      601 tcaaacactt ccttgggcta cctgaattac ccaacccaag tcatcttcaa gtgctgcaaa
      661 ctgattcctg ttatgctagg aggagttttt attcaaggaa agaggtacaa ccttgcagac
      721 gtgtccgctg cagtgtgcat gagccttggc ctgatctggt ttacccttgc tgacagcaca
      781 attgcaccaa actttaatct gacaggtgtg atgcttatct ccctggcact gtgtgcagat
      841 gctgtcattg ggaacgttca ggagaaagct atgaaactgc acaatgcttc caactccgag
      901 atggttttgt attcgtactc aatcggtttt gtgtacattc tgttgggatt gtcatgcacc
      961 agtggactgg gtcctgcact ggcattttgt tcaaagaacc ctgttcggac ttatggctat
     1021 gccttcctgt tttccctcac tggttacttt ggaatctcct ttgttctggc cctcattaaa
     1081 atctttggtg ctcttctggc tgtaacagtg acaacaggac gaaaagcaat gaccatcgtc
     1141 ctgtcctttc tgttctttgc taagccattc acatttcagt atatatggtc tggcttgcta
     1201 gttgtccttg gcatatttct gaatgtttac agcaaaaata tggataaaat aagattgccc
     1261 tcggtgtaca gtgtgataaa gaaagccatg gacatgaaaa agtcaagaac gttggcacag
     1321 actgtgtagg aactgtgttc gcctatgtaa aataaaagtc tgagggaaca atcattaatc
     1381 aactcacttt ccaaaggctt gtggtaaaac caaaggatct gaaggctgct gtcgtctgag
     1441 caggtcgtac tctcggtggt tcctcggcat ctgcctctac agaacacaca cttttgatca
     1501 gctccaaaac gatcaagagc ccacacctag gacattttgc aataaagtca gtatgaagga
     1561 aagtgcttcc tagctgtcct gaacatttca ctggaagtgg accgtgttgc aagactgatt
     1621 ggcaatccgt ccggcctgca gcacggtgcc gtgtagtagc actgtttgtc tccattccgt
     1681 ttcggtggtg ttatttaaat tcttctctgt tataagagta actgatgatt tgaagtttag
     1741 agaaaatagc attcatttat aaataaaatt atcctgtgat tttttttaaa tggcgtttta
     1801 ataaaatttg ttattgagga gaatggagac aggaagaagg gctaatgtac actttaaaac
     1861 atgggttttt aaagttcaga gaaaatagca ttcatttata aataaagtta tcctgtgatt
     1921 tttttaaaaa aa
//
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