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PREDICTED: Rattus norvegicus inositol polyphosphate-1-phosphatase (Inpp1), transcript variant X3, mRNA

NCBI Reference Sequence: XM_008767092.3

FASTA Graphics 

LOCUS       XM_008767092            1632 bp    mRNA    linear   ROD 22-FEB-2024
DEFINITION  PREDICTED: Rattus norvegicus inositol polyphosphate-1-phosphatase
            (Inpp1), transcript variant X3, mRNA.
ACCESSION   XM_008767092
VERSION     XM_008767092.3
DBLINK      BioProject: PRJNA1074393
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086027) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Aug 1, 2024 this sequence was replaced by
            NM_001432664.1.
            
            On Feb 22, 2024 this sequence version replaced XM_008767092.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1632
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="9"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     gene            1..1632
                     /gene="Inpp1"
                     /note="inositol polyphosphate-1-phosphatase; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 2 mRNAs, 2 ESTs, 175 long SRA reads, 7 Proteins"
                     /db_xref="GeneID:316376"
                     /db_xref="RGD:1306071"
     CDS             183..1373
                     /gene="Inpp1"
                     /codon_start=1
                     /product="inositol polyphosphate 1-phosphatase isoform X2"
                     /protein_id="XP_008765314.1"
                     /db_xref="GeneID:316376"
                     /db_xref="RGD:1306071"
                     /translation="MSDILLELLRVSEKAANIARACRQQEALFQLLIEEKKGAEKNKK
                     FAADFKTLADVLVQEVIKQNMENKFPGLGKKVFGEESNEFTNDLGEKITVELQSTEKE
                     TAELLSRVLNGNMLASEALAKVVHEDVDLTDPTLESLEISIPQEILGIWVDPIDSTYQ
                     YIKGSANVKSNQGVFPSGLQCVTILIGVYDLQTGLPLMGVINQPFASQNLTTLRWTGQ
                     CYWGLSYMGNNIHSLQLAISKSNSETQTENSDRESSNPFSAVISTSEKDTIKTALSDV
                     CGGSVFPAAGAGYKSLCVVQGLADIYIFSEDTTYKWDSCAAHAILRAMGGGIVDMKEC
                     LERSPDTGLDLPQLLYHVENKGASGVDLWANKGGLIAYRSRNRLDTFLSRLIQSLGPL
                     KTQT"
     polyA_site      1632
                     /gene="Inpp1"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 agcgaggcct ctccggcctg gcgatgccca cccacacaga gcccgatccc cgaaccgaga
       61 ggctcagctc gcggatcacg ccgccctcgt agctctgcag aagccgccgg aagaaagcga
      121 tcgccagcag agtagcaact gagagccagc gggtgggtga ggctgaggag aaggcgttag
      181 aaatgtcaga catcctcctg gaactgctcc gtgtctctga gaaggctgct aacattgcca
      241 gggcatgccg gcagcaggag gctctcttcc agctgcttat cgaagagaag aaaggtgcag
      301 agaagaacaa gaagtttgct gcagatttca agaccctggc ggatgtgctg gtacaggaag
      361 ttataaaaca gaacatggag aacaagtttc caggcttggg gaaaaaagtt tttggagaag
      421 aatccaatga gtttacaaat gatttagggg aaaagatcac agtggaactg cagtccacag
      481 agaaggaaac agcagagctt cttagcagag tccttaatgg caacatgctg gcgtctgagg
      541 cattggctaa ggtggttcat gaggatgtgg atttaactga tcccactctg gagtcactgg
      601 agatcagcat cccacaggag attcttggga tttgggtgga tcccatagat tcaacctatc
      661 agtatatcaa aggttctgcc aatgttaaat ccaaccaagg agttttcccc agcggacttc
      721 agtgtgtgac cattttaatt ggtgtctatg acctacagac aggcctgcct ctgatgggag
      781 tcatcaatca gccgtttgcg tcccaaaacc taactacttt aaggtggaca ggacagtgct
      841 actggggcct ttcttacatg gggaacaaca tccattccct gcaactcgcc atctctaaaa
      901 gcaacagtga aacacaaact gaaaactccg acagggagtc ctccaacccc ttttccgcag
      961 tcatcagtac cagcgaaaag gacaccatca aaaccgctct atcagacgtg tgcggaggta
     1021 gcgtcttccc tgcggcgggg gctggttaca agagcctctg tgtagtccag ggcttggctg
     1081 acatttacat cttctcagaa gacactacgt acaagtggga ctcctgtgct gctcacgcca
     1141 ttctgagggc catgggcggg ggcattgtag acatgaaaga gtgcttagag agaagtccag
     1201 acacagggct ggatttgcca cagctgctgt atcatgtgga aaataaaggt gcttctgggg
     1261 tggatctctg ggccaacaag ggagggctga tagcatacag gtccaggaat cggctggaca
     1321 ctttcctaag ccgcctcatc caaagcctgg gacctctaaa gacacaaaca taggactctg
     1381 ccctcagggc ccttgagcca aatggaatct tttcctgtta tgtctatctc ttaaagatag
     1441 ttttgtccca ttggttaata ttcaccttcc tgttttgagg aacatattcc cattatgtgt
     1501 tcataatgtg aatttcagta agttaatggc atttatgtca cagttaagtc ggtatatgat
     1561 attgttatat gaacattgtg ctgttaatgt tgcctggaac ccttcaataa aataccaaga
     1621 gaggagcaaa aa
//
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