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PREDICTED: Rattus norvegicus zinc finger protein 2 (Zfp2), transcript variant X10, mRNA

NCBI Reference Sequence: XM_039086557.1

FASTA Graphics 

LOCUS       XM_039086557            3091 bp    mRNA    linear   ROD 22-FEB-2024
DEFINITION  PREDICTED: Rattus norvegicus zinc finger protein 2 (Zfp2),
            transcript variant X10, mRNA.
ACCESSION   XM_039086557
VERSION     XM_039086557.1
DBLINK      BioProject: PRJNA1074393
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086028) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3091
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     gene            1..3091
                     /gene="Zfp2"
                     /gene_synonym="Mkr-2; Mkr2"
                     /note="zinc finger protein 2; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 18
                     long SRA reads, 50 Proteins"
                     /db_xref="GeneID:497897"
                     /db_xref="RGD:1562610"
     CDS             548..1933
                     /gene="Zfp2"
                     /gene_synonym="Mkr-2; Mkr2"
                     /codon_start=1
                     /product="zinc finger protein ZFP2 isoform X1"
                     /protein_id="XP_038942485.1"
                     /db_xref="GeneID:497897"
                     /db_xref="RGD:1562610"
                     /translation="MDREDLWHSALGAVWDSTCWLEEQQERYLGQVTVTQKEIFNEKR
                     VCGGNKTENGSIEHSMLSIPQSIPVTIRLCNWNSYGKGSNQNPKLMKSSRMFVRKKIY
                     ECDECGKSFSQSSSLLKHQRIHTGEKPYKCNVCDKHFIERSSLTVHQRTHTGEKPYKC
                     NECGKAFSQSMNLTVHQRTHTGEKPYQCKECGKAFRKNSSLIQHERIHTGEKPYKCND
                     CGKAFTQSMNLTVHQRTHTGEKPYECNQCGKAFSQSMHLIVHQRSHTGEKPYECSECG
                     KAFSKSSTLTLHQRNHTGEKPYKCNKCGKSFSQSTYLIEHQRLHSGVKPFECNQCGKA
                     FSKNSSLTQHRRIHTGEKPYQCMVCGKHFTGRSSLTVHQVIHTGEKPYECTECGKAFS
                     QSAYLIEHQRIHTGEKPYECDQCGKAFIKNSSLIVHQRIHTGEKPYKCNECGKSFSRS
                     TNLTRHQRTHT"
     polyA_site      3091
                     /gene="Zfp2"
                     /gene_synonym="Mkr-2; Mkr2"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 cgacgcctca tggccttgtg ggaaatgtag tcccgcgtgc ccagtgcggc tgccttcgcg
       61 gccagcctct ggtttcttca gtgactgcag gagtctctca tggcttccct tctgtccctc
      121 agctctgcct ctagagatgg tgaattctct aggaaggccc tacaggaagg aggaaggcaa
      181 tggctgttgg aactctgcca ttgggagctc aggaatcact gatatacaaa gatgtgtctg
      241 tggacttcac ttgggaggag tgatgcagct atgttctgca cagaggaacc tgtatggcag
      301 ggtgatgcgg gagaactgga gcaccctggt ctccctgggt gagcaacccc accttcagcc
      361 ttctgcctat ggaattcaca gcagggcatc aaccatccaa accaaatgtg atctctgacc
      421 tggaacaaga actgactctg agaaaaggag aattcccagg ttgcatctct ctgggccggg
      481 agtcaagact tgaaaccaga caactccaaa gtccaccatt actgaaaatt tgccctatgg
      541 ggtcataatg gacagggaag atctctggca ttcagcttta ggggctgtct gggattctac
      601 ctgttggtta gaagagcaac aggaaagata tctgggccaa gtgacagtga cccaaaagga
      661 aatatttaat gagaagaggg tgtgtggagg taataaaact gaaaacggtt ccattgagca
      721 ttcaatgctt agtataccac aaagcattcc tgtgacaata agactttgta actggaattc
      781 atatggaaaa ggttctaacc aaaatcccaa gttaatgaaa tcttcaagaa tgtttgtaag
      841 aaagaaaata tatgaatgtg atgagtgtgg gaaaagcttc agtcagagtt catcgctgct
      901 taagcaccag aggattcaca ctggggagaa accttacaaa tgtaatgtat gtgacaagca
      961 tttcatcgaa cgctcctccc ttactgtaca tcaaaggact catacgggag aaaaacccta
     1021 caaatgtaat gagtgtggga aagcctttag tcagagtatg aaccttactg ttcatcaaag
     1081 aactcatact ggagagaaac cttatcaatg caaagagtgt gggaaggcct tccgtaagaa
     1141 ctcatccctc attcagcatg aaaggattca tactggagag aagccctaca aatgtaacga
     1201 ctgtgggaaa gcctttacac aaagcatgaa tcttacagtg caccagagaa ctcatactgg
     1261 agaaaagccc tatgaatgta accaatgtgg aaaggccttc agtcaaagca tgcatcttat
     1321 tgtccatcag agaagtcata ctggagaaaa accctatgaa tgcagtgaat gtggaaaagc
     1381 cttcagtaaa agctcaactc tcacgctaca tcagcgaaat cacactggag aaaaacccta
     1441 caaatgtaac aagtgtggta aatcctttag tcaaagtacg taccttatag aacatcagag
     1501 acttcattct ggagtgaaac cttttgaatg taaccagtgt ggaaaagctt tcagtaagaa
     1561 ttcttccctt actcagcatc gcagaatcca cactggtgag aaaccttatc agtgtatggt
     1621 ctgtggaaag catttcactg gaagatcatc cctcactgta caccaagtta tacacactgg
     1681 agaaaagccc tatgagtgca ctgaatgtgg aaaggccttt agtcaaagcg cctatcttat
     1741 tgaacatcaa agaattcaca ctggtgaaaa accctatgaa tgtgatcagt gtggtaaagc
     1801 tttcattaag aattcatccc ttatagtaca ccagaggata catacaggag agaaacctta
     1861 taagtgtaat gaatgtggaa aatccttcag caggagcaca aaccttacaa gacatcagag
     1921 gactcataca tgagaaaagt tttcaccaac cccttcattt tgattaatct tttgatacta
     1981 atcagatgtc acattgatgt agatatgtag taaacataac tattgtggta aacttttagt
     2041 tgaagcacaa cacagcatac cagataataa aaccatagag aggaaccgta tgaaagtgga
     2101 gaacacgtga ttcagatttg agtagctagg acatgaatga tgaagactta ggctgaagat
     2161 aagccctgat gtgtcacact gggaaatctg atttgagcat tccagagttc acactgaatg
     2221 gaaaatgtga tagtgataaa ctggatgact gaaaactctg gttcaaccca gttctaatct
     2281 cccattacct tgaacaggtc atggtctctt tatctagcaa tgagagattt gggatataga
     2341 aagcctatag gatctatatt agccaaaatg cccaacacga agatgcaggg aattttttgg
     2401 taattgctgt tgtatttgtt atagagatgc ttctattcca tagtattgtt ttatgggtgt
     2461 tttaggttaa agctctctac ctctgaatct tattgtcctt catatccccg aatcactatc
     2521 tctcttaaaa tgtaggctag ttgctactga gtagtggata aattgtgcgt attttaatgc
     2581 catagcatgc tgtttttgac ttctcagcta acagtcatta aactgttgtt aaacaaactt
     2641 actatattta gatgacaatg tgacttaaat agaattttta attacctagg aatcaaatac
     2701 atatctttgt gtcttactgg acagtcatgg aaatttaaat acttatgaat tgaacactaa
     2761 ttgtagtgaa cagttttatg tcaacgtgac agaaactaaa gtcatctaag aggaaagaat
     2821 ctcagttaag aaatgggcta taggtatgcc tgtagggcat tttcttaatt agtgattgat
     2881 tggggaagac ccagccattg aggatggtgc catccctggg ctgatggttc tgagttctat
     2941 acaaaagcag actgaacaag cagcactcct ccatggcctc tgcatcagct cctttctcca
     3001 ggttcctgcc tttgtttact tcctgtcctg actctctggt gatgaacagt gatatggaga
     3061 tgtaagccaa ataaaccttt tcctccacgc a
//
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