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NCBI Reference Sequence: XM_063264340.1
FASTA Graphics
LOCUS XM_063264340 4164 bp mRNA linear ROD 22-FEB-2024 DEFINITION PREDICTED: Rattus norvegicus histone deacetylase 7 (Hdac7), transcript variant X5, mRNA. ACCESSION XM_063264340 VERSION XM_063264340.1 DBLINK BioProject: PRJNA1074393 KEYWORDS RefSeq. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_086025) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_036323735.1-RS_2024_02 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.2 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 02/09/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4164 /organism="Rattus norvegicus" /mol_type="mRNA" /strain="BN/NHsdMcwi" /bio_material="RGD 61498" /db_xref="taxon:10116" /chromosome="7" /sex="male" /tissue_type="kidney, spleen, liver" /geo_loc_name="USA: Wisconsin, Milwaukee" /lat_lon="43.05 N 88.04 W" /collected_by="Rebecca Schilling, Melinda Dwinell" gene 1..4164 /gene="Hdac7" /gene_synonym="HD7; HD7a; Hdac7a" /note="histone deacetylase 7; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 16 ESTs, 199 long SRA reads, 9 Proteins" /db_xref="GeneID:84582" /db_xref="RGD:619982" CDS 265..3171 /gene="Hdac7" /gene_synonym="HD7; HD7a; Hdac7a" /codon_start=1 /product="histone deacetylase 7 isoform X5" /protein_id="XP_063120410.1" /db_xref="GeneID:84582" /db_xref="RGD:619982" /translation="MHSPGAGCPALQPDTPGSQPQPMDLRVGQRPTVEPPPEPALLTL QHPQRLHRHLFLAGLQQQQRSAEPMRLSMDPPLPELQGAQQEQELRQLLNKDKSKRSA VASSVVKQKLAEVILKKQQAALERTVHPSSPSIPYRTLEPLDTEGAARSVLSSFLPPV PSLPTEPPEHFPLRKTVSEPNLKLRYKPKKSLERRKNPLLRKESAPPSLRRRPAETLG DSSPSSSSTPASGCSSPNDSEHGPNPALGSEALLGQRLRLQETSLAPFALPTVSLLPA ITLGLPAPARADGDRRTHSTLGPRGPVLGNPHAPLFLHHGLEPEAGGTLPSRLQPILL LDPSVSHAPLWTVPGLGPLPFHFAQPLLTTERLSGSGLHRPLNRTRSEPLPPSATASP LLGPLQPRQDRLKPHVQLIKRPAKPSEKPRLRQIPSAEDLETDGGGVGPMANDGLEHR ESGRGPPEGRGAVSLQQHQQVPLWEQQHLAGRLSQGGPGDSVLLPLAQIGHRPLSRTQ SSPAAPVSLLSPEPTCQTQVLNSSEAPATGLVYDSVMLKHQCSCGDNSKHPEHAGRIQ SIWSRLQERGLRSQCECLRGRKASLEELQSVHSERHVLLYGTNPLSRLKLDNGKLTGL LAQRTFVMLPCGGVGVDTDTIWNELHSSNAARWAAGSVTDLAFKVASRELKNGFAVVR PPGHHADHSTAMGFCFFNSVAIACRQLQQHGKASKILIVDWDVHHGNGTQQTFYQDPR VLYISLHRHDDGNFFPGSGAVDEVGTGSGEGFNVNVAWAGGLDPPMGDPEYLAAFRIV VMPIAREFAPDLVLVSAGFDAAEGHPAPLGGYHVSAKCFGYMTQQLMSLAGGAVVLAL EGGHDLTAICDASEACVAALLGNKVDPLSQESWKQKPNLNAIRSLEAVVRVHRKYWGC MQRLASCPDPWLPRVPGADAEVEAVTALASLSVGILAEDRPSKELMEEEEPMNL" polyA_site 4164 /gene="Hdac7" /gene_synonym="HD7; HD7a; Hdac7a" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 gggtggtgtg tcccagggcc gccagcgccg gccccctccc tcccctcccc cttggcccgc 61 tctcagactc agataaagca tttccttcca ttgtcatcct acccggccgg ccaggctgcc 121 agggccctcc ccctcccggc cccctccctt cctctcgccg tctcacagtc gctctgcagc 181 ctccggcgac cggggggatg tgaggccggc gccccggccc cccgcccgcc atgagccccc 241 ggctctgagg gccccggccc ctggatgcac agccccggcg cgggctgccc tgccctccag 301 ccagacacac caggctctca gccccagccc atggacctgc gagtgggcca aaggcccaca 361 gtggagccgc caccagagcc tgcactgctg accctgcagc accctcagcg cctgcaccgc 421 catctcttcc tagcaggctt gcaacagcaa cagcgctcag ctgagcccat gaggctctcc 481 atggacccac cgctgccgga gctgcagggg gcacagcagg agcaagaact tcggcaactt 541 ctcaataaag acaagagcaa gcgaagtgcc gtagccagca gtgtggtcaa gcagaaactg 601 gctgaagtga tcctgaagaa acagcaggca gcccttgaga gaacagtcca ccccagcagc 661 cccagtatcc cctacagaac tcttgagccc ttggacacag agggtgctgc ccgctccgtg 721 cttagcagct tcctgcctcc tgttcccagc ctgcccactg aacccccgga acattttccc 781 ctgcgtaaaa cagtgtctga gccgaacctg aagctgcgct acaaacccaa gaaatccctg 841 gagaggcgta agaatcccct gctcaggaag gagagcgccc cacccagtct tcggaggagg 901 cctgctgaga ctcttggaga ttcctccccc agtagtagca gcacacctgc gtcagggtgc 961 agctccccca atgacagcga gcatggccct aaccctgccc tgggctcaga ggcgctcttg 1021 ggccagcggc tgcggctgca ggagacttct ttggccccgt tcgctttgcc gacagtgtcc 1081 ttgctgcccg caatcacact ggggctgcct gcccctgcca gggctgatgg tgaccgcagg 1141 acccattcaa ctttgggccc tcggggtcct gtcctaggga acccccatgc tcccctcttc 1201 ctgcaccatg gtttggagcc agaggctggg ggcaccttac cctctcgcct gcagcccatt 1261 ctcctgctgg atccctcagt ctctcatgcc ccactgtgga ctgtgcccgg gctcgggccc 1321 ttgcccttcc actttgccca gcccttactg accaccgagc ggctctctgg gtcaggcctc 1381 catcggccac ttaaccggac ccgctcagag cccctgcccc ccagcgccac tgcctcccct 1441 ctgctgggcc ccctccagcc ccgccaggat cggctcaaac ctcatgtcca gctgatcaag 1501 aggcctgcca agcccagtga gaagccccga ctgcggcaga taccctcggc tgaggaccta 1561 gagacagatg gtgggggagt gggacctatg gcgaatgatg gcctggaaca tagggagtca 1621 ggccgtgggc cgcctgaggg cagaggggcc gtttctctgc agcaacacca acaggtgcca 1681 ctctgggagc agcagcatct tgctgggcgg ctctcccagg gaggccccgg ggactctgtg 1741 ctgctacctc tggcccagat tggacaccgg cccctgtcca gaacccagtc ttccccagcc 1801 gcacctgtct ccctgctgag cccagagccc acctgtcaga cccaagtcct caacagctca 1861 gaggcacctg ccacagggct ggtctatgac tcggtgatgc tgaaacacca atgttcctgt 1921 ggagacaaca gcaagcatcc cgagcacgca ggccgcatcc agagcatctg gtcccggctg 1981 caggaacggg gtctccgcag ccagtgtgag tgtctccgag gccgaaaggc ttccctagaa 2041 gagctgcagt cagtccactc tgaaaggcac gtgctcctct acggcacaaa cccactcagc 2101 cgcctcaaac tggataacgg gaagcttaca ggactcctgg cccagcggac gtttgtgatg 2161 ctaccctgtg gcggggttgg ggtagatact gacaccatct ggaatgagct gcattcctcc 2221 aatgcagccc gctgggctgc aggcagcgtc accgaccttg ccttcaaagt cgcttcccga 2281 gagctaaaga atggctttgc tgtggtgcgg cctccaggac accatgcaga tcattctaca 2341 gccatgggct tttgcttctt caactctgtg gccatcgcct gccgacagct gcagcaacac 2401 ggcaaagcca gcaagatcct cattgtcgac tgggatgttc accatggcaa cggcacacag 2461 cagactttct atcaggaccc cagggtgctc tacatatccc ttcatcgcca tgacgatggc 2521 aacttcttcc cgggcagtgg ggccgtggat gaggtgggaa ccggcagtgg cgagggcttc 2581 aacgtcaatg tggcttgggc tgggggcttg gatccaccca tgggggatcc tgagtacctg 2641 gctgctttca ggatagtggt gatgcccatt gcccgcgagt ttgctccaga cctggtcctg 2701 gtgtccgctg ggtttgacgc tgcagagggt catccagccc cgctgggcgg ctaccatgtt 2761 tctgccaaat gctttgggta catgacacag cagctgatga gcttggcagg aggtgcggtg 2821 gtgttggcct tggagggcgg ccatgacctc acagccatct gtgatgcctc tgaggcctgt 2881 gtggcagctc ttctgggcaa caaggtggat cccctttcac aagaaagctg gaaacagaaa 2941 cccaacctca atgccatccg ctctctggaa gccgtggtca gggtgcacag gaaatactgg 3001 ggctgcatgc agcgcttggc ctcctgtcca gacccctggc tgcccagggt gccgggagct 3061 gatgcagaag tggaggccgt gactgcactg gcatcccttt ccgttggcat cctggctgaa 3121 gacaggccct cgaaggagct gatggaagag gaagaaccca tgaacctcta gggtctcaga 3181 acagatcagc ctgcagatgt ggctctcctc atcactgttg tcaaccctgc tcctgggtct 3241 tcagagatcc cctgggcagg tagtcaggtc cagagcacag cctaccctga cggctatccc 3301 agggaacttg agaagaccac tgggtctggg atgggggtga gggaggactc tgggaggagg 3361 caggctgggc accagggtcc agctgggctc ttccagaaca gattaggcct tctggtgtcc 3421 aggcccctag ctgtggcctc catccctcag gacggcacag agggggactg gctcaagtgg 3481 gcccatccat aaccactatt cttaatgtgg cctcagccgg ggtggccttt cccaggttct 3541 gaagggctgg aggaatagga ggagccgaga gtttcctctc gcctgcttcc tcagatgcct 3601 ttcgggtagc actgggctct gagagccatt ctgagctgct ctctccctgt gagtaatcac 3661 ctgcaagcct cccatacagt cactgtcccg ccagaagcca ccctctgtgg accatctcag 3721 tgcccggtgc agcagacagg cgctctcttg agtcctgtgt ctcctaccca atggtgccaa 3781 accttcatct cccttcaaaa gcacaacaca atcccaggga tgcctggtca ccgcccccag 3841 tatgagcctt ctgtttctgg ggttccccca cccctcagct ctgactgctg ccccacacag 3901 gactagcttg gctgagggat aggaaggtgg gagagtagac agacatgggg gaggggaggc 3961 caccccagaa gtcttcaagg cttttgaggt ctaggcctgg gaccaagaaa gagtattttt 4021 gtgtatgtgt gtgcatgagt gcgtgcgtgc gtgcaagagt gtgtatgtgt gcgcgtcttc 4081 ccccaacccc accatacctt gtgtatgtat gcatgttttt gtaaaaaaga aaaaaaagtg 4141 aaaaaaaaaa ccttccaaac aata //
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