U.S. flag

An official website of the United States government

PREDICTED: Rattus norvegicus histone deacetylase 7 (Hdac7), transcript variant X5, mRNA

NCBI Reference Sequence: XM_063264340.1

FASTA Graphics 

LOCUS       XM_063264340            4164 bp    mRNA    linear   ROD 22-FEB-2024
DEFINITION  PREDICTED: Rattus norvegicus histone deacetylase 7 (Hdac7),
            transcript variant X5, mRNA.
ACCESSION   XM_063264340
VERSION     XM_063264340.1
DBLINK      BioProject: PRJNA1074393
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086025) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4164
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     gene            1..4164
                     /gene="Hdac7"
                     /gene_synonym="HD7; HD7a; Hdac7a"
                     /note="histone deacetylase 7; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     mRNA, 16 ESTs, 199 long SRA reads, 9 Proteins"
                     /db_xref="GeneID:84582"
                     /db_xref="RGD:619982"
     CDS             265..3171
                     /gene="Hdac7"
                     /gene_synonym="HD7; HD7a; Hdac7a"
                     /codon_start=1
                     /product="histone deacetylase 7 isoform X5"
                     /protein_id="XP_063120410.1"
                     /db_xref="GeneID:84582"
                     /db_xref="RGD:619982"
                     /translation="MHSPGAGCPALQPDTPGSQPQPMDLRVGQRPTVEPPPEPALLTL
                     QHPQRLHRHLFLAGLQQQQRSAEPMRLSMDPPLPELQGAQQEQELRQLLNKDKSKRSA
                     VASSVVKQKLAEVILKKQQAALERTVHPSSPSIPYRTLEPLDTEGAARSVLSSFLPPV
                     PSLPTEPPEHFPLRKTVSEPNLKLRYKPKKSLERRKNPLLRKESAPPSLRRRPAETLG
                     DSSPSSSSTPASGCSSPNDSEHGPNPALGSEALLGQRLRLQETSLAPFALPTVSLLPA
                     ITLGLPAPARADGDRRTHSTLGPRGPVLGNPHAPLFLHHGLEPEAGGTLPSRLQPILL
                     LDPSVSHAPLWTVPGLGPLPFHFAQPLLTTERLSGSGLHRPLNRTRSEPLPPSATASP
                     LLGPLQPRQDRLKPHVQLIKRPAKPSEKPRLRQIPSAEDLETDGGGVGPMANDGLEHR
                     ESGRGPPEGRGAVSLQQHQQVPLWEQQHLAGRLSQGGPGDSVLLPLAQIGHRPLSRTQ
                     SSPAAPVSLLSPEPTCQTQVLNSSEAPATGLVYDSVMLKHQCSCGDNSKHPEHAGRIQ
                     SIWSRLQERGLRSQCECLRGRKASLEELQSVHSERHVLLYGTNPLSRLKLDNGKLTGL
                     LAQRTFVMLPCGGVGVDTDTIWNELHSSNAARWAAGSVTDLAFKVASRELKNGFAVVR
                     PPGHHADHSTAMGFCFFNSVAIACRQLQQHGKASKILIVDWDVHHGNGTQQTFYQDPR
                     VLYISLHRHDDGNFFPGSGAVDEVGTGSGEGFNVNVAWAGGLDPPMGDPEYLAAFRIV
                     VMPIAREFAPDLVLVSAGFDAAEGHPAPLGGYHVSAKCFGYMTQQLMSLAGGAVVLAL
                     EGGHDLTAICDASEACVAALLGNKVDPLSQESWKQKPNLNAIRSLEAVVRVHRKYWGC
                     MQRLASCPDPWLPRVPGADAEVEAVTALASLSVGILAEDRPSKELMEEEEPMNL"
     polyA_site      4164
                     /gene="Hdac7"
                     /gene_synonym="HD7; HD7a; Hdac7a"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 gggtggtgtg tcccagggcc gccagcgccg gccccctccc tcccctcccc cttggcccgc
       61 tctcagactc agataaagca tttccttcca ttgtcatcct acccggccgg ccaggctgcc
      121 agggccctcc ccctcccggc cccctccctt cctctcgccg tctcacagtc gctctgcagc
      181 ctccggcgac cggggggatg tgaggccggc gccccggccc cccgcccgcc atgagccccc
      241 ggctctgagg gccccggccc ctggatgcac agccccggcg cgggctgccc tgccctccag
      301 ccagacacac caggctctca gccccagccc atggacctgc gagtgggcca aaggcccaca
      361 gtggagccgc caccagagcc tgcactgctg accctgcagc accctcagcg cctgcaccgc
      421 catctcttcc tagcaggctt gcaacagcaa cagcgctcag ctgagcccat gaggctctcc
      481 atggacccac cgctgccgga gctgcagggg gcacagcagg agcaagaact tcggcaactt
      541 ctcaataaag acaagagcaa gcgaagtgcc gtagccagca gtgtggtcaa gcagaaactg
      601 gctgaagtga tcctgaagaa acagcaggca gcccttgaga gaacagtcca ccccagcagc
      661 cccagtatcc cctacagaac tcttgagccc ttggacacag agggtgctgc ccgctccgtg
      721 cttagcagct tcctgcctcc tgttcccagc ctgcccactg aacccccgga acattttccc
      781 ctgcgtaaaa cagtgtctga gccgaacctg aagctgcgct acaaacccaa gaaatccctg
      841 gagaggcgta agaatcccct gctcaggaag gagagcgccc cacccagtct tcggaggagg
      901 cctgctgaga ctcttggaga ttcctccccc agtagtagca gcacacctgc gtcagggtgc
      961 agctccccca atgacagcga gcatggccct aaccctgccc tgggctcaga ggcgctcttg
     1021 ggccagcggc tgcggctgca ggagacttct ttggccccgt tcgctttgcc gacagtgtcc
     1081 ttgctgcccg caatcacact ggggctgcct gcccctgcca gggctgatgg tgaccgcagg
     1141 acccattcaa ctttgggccc tcggggtcct gtcctaggga acccccatgc tcccctcttc
     1201 ctgcaccatg gtttggagcc agaggctggg ggcaccttac cctctcgcct gcagcccatt
     1261 ctcctgctgg atccctcagt ctctcatgcc ccactgtgga ctgtgcccgg gctcgggccc
     1321 ttgcccttcc actttgccca gcccttactg accaccgagc ggctctctgg gtcaggcctc
     1381 catcggccac ttaaccggac ccgctcagag cccctgcccc ccagcgccac tgcctcccct
     1441 ctgctgggcc ccctccagcc ccgccaggat cggctcaaac ctcatgtcca gctgatcaag
     1501 aggcctgcca agcccagtga gaagccccga ctgcggcaga taccctcggc tgaggaccta
     1561 gagacagatg gtgggggagt gggacctatg gcgaatgatg gcctggaaca tagggagtca
     1621 ggccgtgggc cgcctgaggg cagaggggcc gtttctctgc agcaacacca acaggtgcca
     1681 ctctgggagc agcagcatct tgctgggcgg ctctcccagg gaggccccgg ggactctgtg
     1741 ctgctacctc tggcccagat tggacaccgg cccctgtcca gaacccagtc ttccccagcc
     1801 gcacctgtct ccctgctgag cccagagccc acctgtcaga cccaagtcct caacagctca
     1861 gaggcacctg ccacagggct ggtctatgac tcggtgatgc tgaaacacca atgttcctgt
     1921 ggagacaaca gcaagcatcc cgagcacgca ggccgcatcc agagcatctg gtcccggctg
     1981 caggaacggg gtctccgcag ccagtgtgag tgtctccgag gccgaaaggc ttccctagaa
     2041 gagctgcagt cagtccactc tgaaaggcac gtgctcctct acggcacaaa cccactcagc
     2101 cgcctcaaac tggataacgg gaagcttaca ggactcctgg cccagcggac gtttgtgatg
     2161 ctaccctgtg gcggggttgg ggtagatact gacaccatct ggaatgagct gcattcctcc
     2221 aatgcagccc gctgggctgc aggcagcgtc accgaccttg ccttcaaagt cgcttcccga
     2281 gagctaaaga atggctttgc tgtggtgcgg cctccaggac accatgcaga tcattctaca
     2341 gccatgggct tttgcttctt caactctgtg gccatcgcct gccgacagct gcagcaacac
     2401 ggcaaagcca gcaagatcct cattgtcgac tgggatgttc accatggcaa cggcacacag
     2461 cagactttct atcaggaccc cagggtgctc tacatatccc ttcatcgcca tgacgatggc
     2521 aacttcttcc cgggcagtgg ggccgtggat gaggtgggaa ccggcagtgg cgagggcttc
     2581 aacgtcaatg tggcttgggc tgggggcttg gatccaccca tgggggatcc tgagtacctg
     2641 gctgctttca ggatagtggt gatgcccatt gcccgcgagt ttgctccaga cctggtcctg
     2701 gtgtccgctg ggtttgacgc tgcagagggt catccagccc cgctgggcgg ctaccatgtt
     2761 tctgccaaat gctttgggta catgacacag cagctgatga gcttggcagg aggtgcggtg
     2821 gtgttggcct tggagggcgg ccatgacctc acagccatct gtgatgcctc tgaggcctgt
     2881 gtggcagctc ttctgggcaa caaggtggat cccctttcac aagaaagctg gaaacagaaa
     2941 cccaacctca atgccatccg ctctctggaa gccgtggtca gggtgcacag gaaatactgg
     3001 ggctgcatgc agcgcttggc ctcctgtcca gacccctggc tgcccagggt gccgggagct
     3061 gatgcagaag tggaggccgt gactgcactg gcatcccttt ccgttggcat cctggctgaa
     3121 gacaggccct cgaaggagct gatggaagag gaagaaccca tgaacctcta gggtctcaga
     3181 acagatcagc ctgcagatgt ggctctcctc atcactgttg tcaaccctgc tcctgggtct
     3241 tcagagatcc cctgggcagg tagtcaggtc cagagcacag cctaccctga cggctatccc
     3301 agggaacttg agaagaccac tgggtctggg atgggggtga gggaggactc tgggaggagg
     3361 caggctgggc accagggtcc agctgggctc ttccagaaca gattaggcct tctggtgtcc
     3421 aggcccctag ctgtggcctc catccctcag gacggcacag agggggactg gctcaagtgg
     3481 gcccatccat aaccactatt cttaatgtgg cctcagccgg ggtggccttt cccaggttct
     3541 gaagggctgg aggaatagga ggagccgaga gtttcctctc gcctgcttcc tcagatgcct
     3601 ttcgggtagc actgggctct gagagccatt ctgagctgct ctctccctgt gagtaatcac
     3661 ctgcaagcct cccatacagt cactgtcccg ccagaagcca ccctctgtgg accatctcag
     3721 tgcccggtgc agcagacagg cgctctcttg agtcctgtgt ctcctaccca atggtgccaa
     3781 accttcatct cccttcaaaa gcacaacaca atcccaggga tgcctggtca ccgcccccag
     3841 tatgagcctt ctgtttctgg ggttccccca cccctcagct ctgactgctg ccccacacag
     3901 gactagcttg gctgagggat aggaaggtgg gagagtagac agacatgggg gaggggaggc
     3961 caccccagaa gtcttcaagg cttttgaggt ctaggcctgg gaccaagaaa gagtattttt
     4021 gtgtatgtgt gtgcatgagt gcgtgcgtgc gtgcaagagt gtgtatgtgt gcgcgtcttc
     4081 ccccaacccc accatacctt gtgtatgtat gcatgttttt gtaaaaaaga aaaaaaagtg
     4141 aaaaaaaaaa ccttccaaac aata
//
Feature
Display: FASTA GenBank Help
Details

Supplemental Content

Change region shown

Customize view

Reference sequence information

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
External link. Please review our privacy policy.