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NCBI Reference Sequence: XM_063282263.1
FASTA Graphics
LOCUS XM_063282263 7123 bp mRNA linear ROD 22-FEB-2024 DEFINITION PREDICTED: Rattus norvegicus nucleoporin 210-like (Nup210l), transcript variant X7, mRNA. ACCESSION XM_063282263 VERSION XM_063282263.1 DBLINK BioProject: PRJNA1074393 KEYWORDS RefSeq. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_086020) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_036323735.1-RS_2024_02 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.2 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 02/09/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..7123 /organism="Rattus norvegicus" /mol_type="mRNA" /strain="BN/NHsdMcwi" /bio_material="RGD 61498" /db_xref="taxon:10116" /chromosome="2" /sex="male" /tissue_type="kidney, spleen, liver" /geo_loc_name="USA: Wisconsin, Milwaukee" /lat_lon="43.05 N 88.04 W" /collected_by="Rebecca Schilling, Melinda Dwinell" gene 1..7123 /gene="Nup210l" /gene_synonym="RGD1310250" /note="nucleoporin 210-like; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 long SRA reads" /db_xref="GeneID:365844" /db_xref="RGD:1310250" CDS 1712..7003 /gene="Nup210l" /gene_synonym="RGD1310250" /codon_start=1 /product="nuclear pore membrane glycoprotein 210-like isoform X7" /protein_id="XP_063138333.1" /db_xref="GeneID:365844" /db_xref="RGD:1310250" /translation="MVRALDSKGNTFSTLAGMVFEWSIAQDKESSREELSSKIRILNY SEAEYSPPDYITEMEKEEKQGDVILVSGMRTGAAVVKVRIHEPFYKKVAAALIRLLVL ENIFLIPSHDTYLLVGAYMKYRVAKMVQGRMTEGKFPLEHYTLELQDHRLIDVGLRSG TVALLDEKTAMVTALQLGQTNLVFVHKNVHMRSVSGLPNSTIYVVEPGFLGFTIHPGG RWSLEVGQVYIITVEVFDKSSTRVYISDNLKITFQFSKEYFEEQLSTLNGSYHMVKAL KDGAVVINASLTSSLWESNSSQPKTYQINHQQEVKIYFPIQLKPSFLAFPHYPLGISN RFTVQVEGGSGNFTWSSSNETVAMVTTKGVVTAGQVRGNSTILARDVQNPFRSGNIKV YVMKLNKMELLPFQADVEIGQIIEVPIAMYHVNTETKEAIAFTDCSHLPLDLNSDKQG VFTLFKEGIQKPGPMHCSSVHIAATSPGHTLVTISVTGHEEHVWSSATFAAYEPLKAL NPVEVALVTWHSVKEMVFEGGPHPWILEPSRFFLELSMEKAEAIRITEVRLPAKRKQN QYVYRVLCLELGEQVLTLRIGNHPGVLNPSPSVEKVQVRFICAHPASMLVTPMYKVPA GTQPCPLPQYNKQLIPVSSVRDTVLELAVFDQHGRKFDNFSSLMLEWKSSNETLARFE SPKSVEMVARDDGSGQTRLHGHQILEVHQIKGTVLIGVNFAGYSGKRSPKGISNSPRS AGVELLLVEDVTVQPENATIYNHPDVKEVFNLVEGSGYFLVNSSEQDIVTTTYMESEG SVQLVPAHPGFLTLKVYDLCLAYLGPAMAQVRVSDIQEVELDLIDKVEIGKTVLVVVR VLGSSKHPFRNKYFRNMDVRLQLASAIVTLRLTEDQDEYSENYMLRAVTVGQTTLVAI ATDRMGRKFTSAPRHIEVFPPFRLVPEKMTLIITNMMQIMSEGGPQPQSTIHFSISNQ TVAAVNRRGQVTAKVVGTAVVHGTIQTVNEDTGKVIVFSQDEVQIEVVQLQAVRILAA ATRLVTATEMPVYVMGVTSTQTPFSFSNASPMLTFHWSMSKRDVLDLVPRHSEVFLQL PAENNFAMVVHTKAAGRTTIKVTVRSKNSSFGQFERNVLELSDEIQILVFEKLQLFYA DCQREQILMPMNSQLKLHTNREGAASVSSRVLKCFPNSSVIEEDGEGLLRSGSIAGTA VLEVTSIEPFGVNQTTVTGVQATPVTYLRLSSYPKLYTAQGRTLSAFPLGMSLTFIVE FYNNIGEKFHTHNTRLYMALNRDDLLLIGPGNKNYTYMAQAVNKGVTVVGLWDQRHPG MADYIPVAVEHAIEPDTKLISVGDVICFSTQLVSQHGEPGVWMISTNNIIQTDTVTGV GVARSPGTATIFHDIPGVVKTFREVVVNASSRLTLSYDLKTYLTNTPNATVFKLFIST GRSVNLKGSCTPSQALAVEKVLLPETLMLCHVQFSNTLLDIPASKVFHIYSEFSVEKG VYVCLIKVRQESEELRQVLSVADTSVYGWATLLSERGKNGMQRILIPFIPGFYMNQSE FVLGHKDTGELRILGVERVLESLEVFHSSPFLTVSGHKHSTLTTSVTLYLIRIVNFTA FQQMSSPAFINVSCALTNQHEAVVVRAKDVSGADHCEESGVFKNFVGSYQILLFTLFA VLASTAFIFLAYNAFLNKVQTIPVVYVPTIGPTQPGKDCPPSFPVHVCLSHSPAFTIL LFFLGSYTATCSPPHFLSSQPPLVQSRLQHWLWSIKH" polyA_site 7123 /gene="Nup210l" /gene_synonym="RGD1310250" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 acagtgaaga agaaaaggat tacaggaatc tggtgtggtt ccacagtgtg gaggggcctg 61 caggtggcat ccttggatgg gatataccct aagttatgag gctctttaag aaaaaacaaa 121 aaacaaacaa acaaacaacc aaaactaggt tggggagtcc gcctctcgtt tgagaacagc 181 tagtcagtgt aagcaattgt tggcataggc aagcccggag tcagaaagac actgccggca 241 ttcattttcc ccaactgaaa ggttaatgat ggaaactgaa atgggtggag tgagagccac 301 gttaggagac cctgacaaca accacaaagc tagagtaata agacaggatt cattatgtat 361 gaagatgatg atctgagagt ctccttcctg gctgtgggaa ggtgggtagt ctgctctggg 421 ataacgacca taaacttgtg cgtattagag aagtcagtgg cgggtgatgt ggttacctga 481 actgtaagag tatacccaaa ggaaactcta gatatcagag tatttattct aagtgaaaga 541 gatttctcct tcctgtacct ttgcagatcg aagggttgga gtaggacttt gctcatgcta 601 ccagccctca acttagaaac tacattgcta gcccctttcc tgccttctag gagtcgaaga 661 acttaaactc tcatgaagtt tgaggaactt aggtttgtgg gcaacccagt gtgatgttca 721 tcatttagta attattctag tattgagagc tttccatcca tccaatatgg tagtgattat 781 tttgtatttt tgttttggtc ccagaatgta ggatactttc cattttagat agcagctcaa 841 tttctaggct tataggaaat tacatttcaa ggtaagagga aactttgtct tgttacaaac 901 acagccacaa tgctattttc ccatgctgtg agtatttttt aatagtttcg attttttctt 961 ttaagattta cttattttat gtatgagtac actgtcttca gacacatcgg aagagggcgt 1021 cagaccctat tacagctggt tgtgagccac catgtggttg ctgggaattg aactcaggtc 1081 ctctggaaaa gcaggcagtg ctcttaactg ctgagccatc tctccagcca tattttgttt 1141 tttgtttttt tttttaaaga tttattcatt tattatatat aagtacactg ttgctgtctt 1201 cagacacacc agaagagggc atcagatctc tttacagatg gttgtgagcc accatgtggt 1261 tgctgggaat tgaactcagg acctctggaa gagcagtcga gtgctcttaa ccactgagcc 1321 atctctccag cccttgtttt ttgtttttta atagaggatt tctctgcgta accctggctg 1381 tcctggaatt tacactgtag atagaccagg ctggaaatgg aattctcaga tgtgactgtc 1441 tctgcctcca aagttctggg attcaaggca ttccactcag catgatgcag ttgccataca 1501 gcctttatac gaaaatggca cctcttgctc ccaaagggca gttcttgttg ctgaatccac 1561 ccaaccgata cgactcagca gtattattct cgctcgagaa gtggtgacag accatgagct 1621 acgctgtgat gttaaggtcg atgtgataga caacattgag attgtttctc gaacccggga 1681 gctgtacgtg gacgatgcac cactggaact tatggtgagg gccctggatt ctaaaggaaa 1741 cacattcagc actctggcgg gcatggtgtt tgagtggagt attgctcagg acaaggagtc 1801 atcaagagag gagctgtcta gcaaaattag aattctgaac tactctgagg ctgagtattc 1861 tccccctgac tatataactg agatggaaaa ggaagagaaa caaggggacg tgatcttggt 1921 gtctgggatg agaactggag ctgctgttgt aaaagtgcga attcacgagc cgttctacaa 1981 gaaagtggct gcagccttga tccgcctgct tgttctggag aacatatttc ttataccatc 2041 ccatgataca tatctcttag taggagccta tatgaaatac agagtggcaa aaatggttca 2101 gggaagaatg acagagggaa aatttcccct ggaacattac acgctggagc tgcaagacca 2161 cagacttata gatgttgggc ttcgttctgg aacagtggct ctattggatg agaaaacagc 2221 catggtgaca gctctccaac tgggccaaac taacctcgtc tttgtgcaca aaaatgttca 2281 tatgcgctct gtgtctggac tcccaaactc taccatatat gttgtagagc caggattttt 2341 aggtttcaca atccatcccg gaggccggtg gagtctagag gtggggcagg tgtacatcat 2401 cacagtggaa gtgtttgaca agagcagcac aagggtctac atttctgata atctcaagat 2461 cacgttccag ttttctaagg agtactttga agagcagctg agtactttaa atggatctta 2521 ccacatggta aaggccctga aagatggagc tgtggtgata aatgcaagcc tgacctccag 2581 cctttgggag agcaacagtt cccagcctaa aacctatcaa atcaatcacc aacaagaagt 2641 gaagatttac tttcccattc aacttaaacc cagctttctg gcatttcccc attatcctct 2701 gggaatatcg aatcgattca cagttcaggt agagggtggt agtggcaact tcacctggag 2761 ttcttctaac gaaacagtgg ccatggttac caccaaaggt gtggtaaccg caggtcaggt 2821 gagaggaaac agcaccattt tggcaagaga tgtacaaaat ccttttcgat ctggaaatat 2881 taaggtgtat gtcatgaagc tgaacaaaat ggaactgtta ccatttcaag ctgatgtgga 2941 aataggccag attattgagg tgcccattgc aatgtatcat gtaaatacag agaccaagga 3001 ggccatcgca ttcacagact gctcgcactt acccctcgat ctcaactcgg acaagcaagg 3061 agtcttcact ctttttaaag aaggtattca aaagccagga ccgatgcact gttctagtgt 3121 ccacatagca gccacgtctc cgggccatac tctggtgacc atcagtgtga ctggacatga 3181 agagcacgtg tggagcagtg ccacatttgc tgcttacgag cctctaaagg ctctaaaccc 3241 tgtggaagtg gctttggtga catggcactc cgtgaaggaa atggtatttg aagggggccc 3301 tcatccctgg atcttggagc catcccgatt ttttttggag ctgagcatgg agaaggcaga 3361 ggccattaga ataacagaag tccggctgcc agctaagagg aagcagaacc agtatgtcta 3421 ccgcgtcctg tgcctagagt taggggaaca agttctcact ttacggattg ggaatcaccc 3481 gggagtccta aaccctagtc cctctgtgga aaaggtgcag gtgcgcttca tctgtgccca 3541 tcctgccagt atgttggtga caccgatgta caaggtgcca gctggcaccc agccatgtcc 3601 tctgccacag tacaacaagc aactgattcc tgtgtccagt gtgagggaca cggtcctgga 3661 actggcagta tttgatcagc acgggaggaa gtttgataat ttcagctcat tgatgctaga 3721 atggaaatct tccaacgaga cgctagcccg ttttgaaagt cctaagtcag tggagatggt 3781 agccagagac gatggcagtg ggcagacccg gctgcacggc catcagatcc ttgaggtgca 3841 tcagataaag gggactgtgc tcattggagt caattttgct ggttattcag ggaagagaag 3901 cccaaaaggg atttccaact cgccaaggtc cgcgggggta gaactactct tggtggaaga 3961 tgtcacagtc cagcctgaga acgccaccat ctacaaccat cctgatgtga aggaagtatt 4021 taaccttgtg gaaggatctg gctactttct ggtcaacagc agtgagcaag acatcgtcac 4081 caccacttac atggaatcag aaggctcggt ccagttagtt ccagcacatc ctggatttct 4141 aaccctgaaa gtgtatgacc tgtgcctggc ctacttgggt ccagcaatgg cccaggtcag 4201 ggtgtcagac atacaggagg tagagctgga tctgatcgat aaggtggaga tcggtaaaac 4261 cgtgttagtg gttgtgaggg ttcttggctc ttctaaacac cctttccgga acaagtactt 4321 cagaaacatg gatgtcaggc tgcagctggc atctgccatt gtcaccctgc gattaacgga 4381 agaccaggat gaatactctg aaaactacat gctccgtgct gtcactgttg gacaaaccac 4441 acttgtggcc attgccacag atagaatggg gaggaaattc acatcagcgc ctcggcacat 4501 cgaggtcttt cctccattta gactcgttcc tgagaaaatg accctgatta tcactaacat 4561 gatgcagata atgtctgaag gtggccctca gccccagtcc accattcact tctctatcag 4621 caatcagact gtagctgctg ttaacaggag agggcaagtt acagccaaag tggtgggcac 4681 ggctgttgta cacggcacca tccagacagt gaatgaagac actggcaaag tcattgtgtt 4741 ttcccaggat gaagtccaaa ttgaagttgt ccagctccag gctgttagga tccttgcggc 4801 tgcgacccga ctcgtcacag ccacggagat gccagtttac gtcatgggag tgactagtac 4861 ccagactcct ttctccttca gcaatgccag ccccatgctc acattccact ggtccatgag 4921 caaaagagat gtgctggacc tggtacccag gcattcagag gtatttctac aacttccggc 4981 tgagaacaac tttgccatgg ttgttcacac aaaagccgct ggcaggacca cgatcaaggt 5041 cacggtccgc agtaagaaca gctccttcgg tcagtttgag aggaatgtgc tcgagctgtc 5101 cgatgagatc cagatcctgg tatttgaaaa actccaactt ttctatgcag actgccaacg 5161 tgagcagatt ctgatgccta tgaattctca gctcaagcta cacaccaaca gagaaggcgc 5221 agcctctgtg agttcccgtg ttctcaagtg tttccctaac tcctccgtca ttgaagaaga 5281 tggtgaagga ctcctgagat ctggatccat tgcgggtact gcagtattgg aagtcacttc 5341 tatagaacct tttggagtca atcaaacaac tgtaactgga gtccaggcga caccagtgac 5401 ttaccttcgg ttgagcagct accccaagct atacacagca caaggaagga ccctgtcagc 5461 ctttcctctg ggcatgtctc tcacctttat tgttgagttt tataataaca ttggagaaaa 5521 attccacacc cacaatactc ggctttatat ggctctgaac agagacgact tgctgcttat 5581 tggaccagga aacaaaaact atacatatat ggcccaggct gtgaataaag gggtgacagt 5641 tgtgggtctg tgggaccaaa gacaccccgg catggcagat tacatccctg tggctgtaga 5701 gcatgccatt gagccagaca ccaagcttat ctctgttggc gatgtcatct gcttcagcac 5761 tcagctcgtc agtcagcacg gtgagcctgg ggtgtggatg atttccacca acaacatcat 5821 acagacagac actgtcactg gagtaggagt ggctcggagc ccaggaactg caacaatttt 5881 tcatgacatc cctggagttg tgaaaacgtt ccgagaggta gtagtcaatg catcatcaag 5941 attgacactc agctatgacc tgaaaactta cctcaccaat acccccaatg caactgtatt 6001 caaactcttc atcagcacag gcagaagtgt caacctcaaa ggatcctgta ccccaagtca 6061 ggctttggct gttgaaaaag ttcttcttcc tgagaccctc atgctatgcc atgtgcagtt 6121 cagcaatact ttactagaca ttccagcaag taaagtcttt cacatttact cagaattcag 6181 cgtggagaaa ggggtctatg tctgcctaat caaggttcga caggagtcag aggagctgcg 6241 ccaggtcctg agtgtggcgg acacctcggt ctatgggtgg gcaactctgc tcagtgaacg 6301 tggcaagaat ggcatgcaaa gaatcctcat tcctttcatc cctggctttt acatgaacca 6361 gtccgagttt gttcttggcc acaaagacac cggggagcta agaatcctgg gagtggagag 6421 agttcttgag agcctagagg tcttccacag ctccccattt ctaacagtct ccggccataa 6481 gcattctacc ctcacaacaa gcgtaactct ctacctgata cgcatagtca acttcactgc 6541 cttccagcag atgtcatcac ctgctttcat taatgtttcc tgtgcactga ccaatcaaca 6601 tgaggctgtg gtagtcagag caaaagatgt atctggtgca gatcactgtg aagagtcagg 6661 tgtcttcaag aatttcgttg gttcttacca gatcctgctg tttacactct ttgctgtgtt 6721 ggcatccact gctttcatct tcctagcata caatgccttc ctgaacaagg tacagactat 6781 tccagttgtt tatgtgccaa caataggacc gactcagcca ggtaaggact gcccgccctc 6841 cttcccagtt cacgtctgtc tgtctcactc acctgccttc actattttgc ttttttttct 6901 aggttcctat acagccacct gttctccccc tcacttcctg agctcacagc caccactagt 6961 gcagagtcgg ctacaacact ggctgtggag tataaaacac taacctagac aggtcccttc 7021 aactgtccta atcctgcaga agtttagtag ctaactctac aaactaaacc tccaaaacaa 7081 gtttgtagaa cctataaata aaggctcatc agtggttaag tca //
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