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PREDICTED: Rattus norvegicus nucleoporin 210-like (Nup210l), transcript variant X7, mRNA

NCBI Reference Sequence: XM_063282263.1

FASTA Graphics 

LOCUS       XM_063282263            7123 bp    mRNA    linear   ROD 22-FEB-2024
DEFINITION  PREDICTED: Rattus norvegicus nucleoporin 210-like (Nup210l),
            transcript variant X7, mRNA.
ACCESSION   XM_063282263
VERSION     XM_063282263.1
DBLINK      BioProject: PRJNA1074393
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086020) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7123
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     gene            1..7123
                     /gene="Nup210l"
                     /gene_synonym="RGD1310250"
                     /note="nucleoporin 210-like; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 7 long
                     SRA reads"
                     /db_xref="GeneID:365844"
                     /db_xref="RGD:1310250"
     CDS             1712..7003
                     /gene="Nup210l"
                     /gene_synonym="RGD1310250"
                     /codon_start=1
                     /product="nuclear pore membrane glycoprotein 210-like
                     isoform X7"
                     /protein_id="XP_063138333.1"
                     /db_xref="GeneID:365844"
                     /db_xref="RGD:1310250"
                     /translation="MVRALDSKGNTFSTLAGMVFEWSIAQDKESSREELSSKIRILNY
                     SEAEYSPPDYITEMEKEEKQGDVILVSGMRTGAAVVKVRIHEPFYKKVAAALIRLLVL
                     ENIFLIPSHDTYLLVGAYMKYRVAKMVQGRMTEGKFPLEHYTLELQDHRLIDVGLRSG
                     TVALLDEKTAMVTALQLGQTNLVFVHKNVHMRSVSGLPNSTIYVVEPGFLGFTIHPGG
                     RWSLEVGQVYIITVEVFDKSSTRVYISDNLKITFQFSKEYFEEQLSTLNGSYHMVKAL
                     KDGAVVINASLTSSLWESNSSQPKTYQINHQQEVKIYFPIQLKPSFLAFPHYPLGISN
                     RFTVQVEGGSGNFTWSSSNETVAMVTTKGVVTAGQVRGNSTILARDVQNPFRSGNIKV
                     YVMKLNKMELLPFQADVEIGQIIEVPIAMYHVNTETKEAIAFTDCSHLPLDLNSDKQG
                     VFTLFKEGIQKPGPMHCSSVHIAATSPGHTLVTISVTGHEEHVWSSATFAAYEPLKAL
                     NPVEVALVTWHSVKEMVFEGGPHPWILEPSRFFLELSMEKAEAIRITEVRLPAKRKQN
                     QYVYRVLCLELGEQVLTLRIGNHPGVLNPSPSVEKVQVRFICAHPASMLVTPMYKVPA
                     GTQPCPLPQYNKQLIPVSSVRDTVLELAVFDQHGRKFDNFSSLMLEWKSSNETLARFE
                     SPKSVEMVARDDGSGQTRLHGHQILEVHQIKGTVLIGVNFAGYSGKRSPKGISNSPRS
                     AGVELLLVEDVTVQPENATIYNHPDVKEVFNLVEGSGYFLVNSSEQDIVTTTYMESEG
                     SVQLVPAHPGFLTLKVYDLCLAYLGPAMAQVRVSDIQEVELDLIDKVEIGKTVLVVVR
                     VLGSSKHPFRNKYFRNMDVRLQLASAIVTLRLTEDQDEYSENYMLRAVTVGQTTLVAI
                     ATDRMGRKFTSAPRHIEVFPPFRLVPEKMTLIITNMMQIMSEGGPQPQSTIHFSISNQ
                     TVAAVNRRGQVTAKVVGTAVVHGTIQTVNEDTGKVIVFSQDEVQIEVVQLQAVRILAA
                     ATRLVTATEMPVYVMGVTSTQTPFSFSNASPMLTFHWSMSKRDVLDLVPRHSEVFLQL
                     PAENNFAMVVHTKAAGRTTIKVTVRSKNSSFGQFERNVLELSDEIQILVFEKLQLFYA
                     DCQREQILMPMNSQLKLHTNREGAASVSSRVLKCFPNSSVIEEDGEGLLRSGSIAGTA
                     VLEVTSIEPFGVNQTTVTGVQATPVTYLRLSSYPKLYTAQGRTLSAFPLGMSLTFIVE
                     FYNNIGEKFHTHNTRLYMALNRDDLLLIGPGNKNYTYMAQAVNKGVTVVGLWDQRHPG
                     MADYIPVAVEHAIEPDTKLISVGDVICFSTQLVSQHGEPGVWMISTNNIIQTDTVTGV
                     GVARSPGTATIFHDIPGVVKTFREVVVNASSRLTLSYDLKTYLTNTPNATVFKLFIST
                     GRSVNLKGSCTPSQALAVEKVLLPETLMLCHVQFSNTLLDIPASKVFHIYSEFSVEKG
                     VYVCLIKVRQESEELRQVLSVADTSVYGWATLLSERGKNGMQRILIPFIPGFYMNQSE
                     FVLGHKDTGELRILGVERVLESLEVFHSSPFLTVSGHKHSTLTTSVTLYLIRIVNFTA
                     FQQMSSPAFINVSCALTNQHEAVVVRAKDVSGADHCEESGVFKNFVGSYQILLFTLFA
                     VLASTAFIFLAYNAFLNKVQTIPVVYVPTIGPTQPGKDCPPSFPVHVCLSHSPAFTIL
                     LFFLGSYTATCSPPHFLSSQPPLVQSRLQHWLWSIKH"
     polyA_site      7123
                     /gene="Nup210l"
                     /gene_synonym="RGD1310250"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 acagtgaaga agaaaaggat tacaggaatc tggtgtggtt ccacagtgtg gaggggcctg
       61 caggtggcat ccttggatgg gatataccct aagttatgag gctctttaag aaaaaacaaa
      121 aaacaaacaa acaaacaacc aaaactaggt tggggagtcc gcctctcgtt tgagaacagc
      181 tagtcagtgt aagcaattgt tggcataggc aagcccggag tcagaaagac actgccggca
      241 ttcattttcc ccaactgaaa ggttaatgat ggaaactgaa atgggtggag tgagagccac
      301 gttaggagac cctgacaaca accacaaagc tagagtaata agacaggatt cattatgtat
      361 gaagatgatg atctgagagt ctccttcctg gctgtgggaa ggtgggtagt ctgctctggg
      421 ataacgacca taaacttgtg cgtattagag aagtcagtgg cgggtgatgt ggttacctga
      481 actgtaagag tatacccaaa ggaaactcta gatatcagag tatttattct aagtgaaaga
      541 gatttctcct tcctgtacct ttgcagatcg aagggttgga gtaggacttt gctcatgcta
      601 ccagccctca acttagaaac tacattgcta gcccctttcc tgccttctag gagtcgaaga
      661 acttaaactc tcatgaagtt tgaggaactt aggtttgtgg gcaacccagt gtgatgttca
      721 tcatttagta attattctag tattgagagc tttccatcca tccaatatgg tagtgattat
      781 tttgtatttt tgttttggtc ccagaatgta ggatactttc cattttagat agcagctcaa
      841 tttctaggct tataggaaat tacatttcaa ggtaagagga aactttgtct tgttacaaac
      901 acagccacaa tgctattttc ccatgctgtg agtatttttt aatagtttcg attttttctt
      961 ttaagattta cttattttat gtatgagtac actgtcttca gacacatcgg aagagggcgt
     1021 cagaccctat tacagctggt tgtgagccac catgtggttg ctgggaattg aactcaggtc
     1081 ctctggaaaa gcaggcagtg ctcttaactg ctgagccatc tctccagcca tattttgttt
     1141 tttgtttttt tttttaaaga tttattcatt tattatatat aagtacactg ttgctgtctt
     1201 cagacacacc agaagagggc atcagatctc tttacagatg gttgtgagcc accatgtggt
     1261 tgctgggaat tgaactcagg acctctggaa gagcagtcga gtgctcttaa ccactgagcc
     1321 atctctccag cccttgtttt ttgtttttta atagaggatt tctctgcgta accctggctg
     1381 tcctggaatt tacactgtag atagaccagg ctggaaatgg aattctcaga tgtgactgtc
     1441 tctgcctcca aagttctggg attcaaggca ttccactcag catgatgcag ttgccataca
     1501 gcctttatac gaaaatggca cctcttgctc ccaaagggca gttcttgttg ctgaatccac
     1561 ccaaccgata cgactcagca gtattattct cgctcgagaa gtggtgacag accatgagct
     1621 acgctgtgat gttaaggtcg atgtgataga caacattgag attgtttctc gaacccggga
     1681 gctgtacgtg gacgatgcac cactggaact tatggtgagg gccctggatt ctaaaggaaa
     1741 cacattcagc actctggcgg gcatggtgtt tgagtggagt attgctcagg acaaggagtc
     1801 atcaagagag gagctgtcta gcaaaattag aattctgaac tactctgagg ctgagtattc
     1861 tccccctgac tatataactg agatggaaaa ggaagagaaa caaggggacg tgatcttggt
     1921 gtctgggatg agaactggag ctgctgttgt aaaagtgcga attcacgagc cgttctacaa
     1981 gaaagtggct gcagccttga tccgcctgct tgttctggag aacatatttc ttataccatc
     2041 ccatgataca tatctcttag taggagccta tatgaaatac agagtggcaa aaatggttca
     2101 gggaagaatg acagagggaa aatttcccct ggaacattac acgctggagc tgcaagacca
     2161 cagacttata gatgttgggc ttcgttctgg aacagtggct ctattggatg agaaaacagc
     2221 catggtgaca gctctccaac tgggccaaac taacctcgtc tttgtgcaca aaaatgttca
     2281 tatgcgctct gtgtctggac tcccaaactc taccatatat gttgtagagc caggattttt
     2341 aggtttcaca atccatcccg gaggccggtg gagtctagag gtggggcagg tgtacatcat
     2401 cacagtggaa gtgtttgaca agagcagcac aagggtctac atttctgata atctcaagat
     2461 cacgttccag ttttctaagg agtactttga agagcagctg agtactttaa atggatctta
     2521 ccacatggta aaggccctga aagatggagc tgtggtgata aatgcaagcc tgacctccag
     2581 cctttgggag agcaacagtt cccagcctaa aacctatcaa atcaatcacc aacaagaagt
     2641 gaagatttac tttcccattc aacttaaacc cagctttctg gcatttcccc attatcctct
     2701 gggaatatcg aatcgattca cagttcaggt agagggtggt agtggcaact tcacctggag
     2761 ttcttctaac gaaacagtgg ccatggttac caccaaaggt gtggtaaccg caggtcaggt
     2821 gagaggaaac agcaccattt tggcaagaga tgtacaaaat ccttttcgat ctggaaatat
     2881 taaggtgtat gtcatgaagc tgaacaaaat ggaactgtta ccatttcaag ctgatgtgga
     2941 aataggccag attattgagg tgcccattgc aatgtatcat gtaaatacag agaccaagga
     3001 ggccatcgca ttcacagact gctcgcactt acccctcgat ctcaactcgg acaagcaagg
     3061 agtcttcact ctttttaaag aaggtattca aaagccagga ccgatgcact gttctagtgt
     3121 ccacatagca gccacgtctc cgggccatac tctggtgacc atcagtgtga ctggacatga
     3181 agagcacgtg tggagcagtg ccacatttgc tgcttacgag cctctaaagg ctctaaaccc
     3241 tgtggaagtg gctttggtga catggcactc cgtgaaggaa atggtatttg aagggggccc
     3301 tcatccctgg atcttggagc catcccgatt ttttttggag ctgagcatgg agaaggcaga
     3361 ggccattaga ataacagaag tccggctgcc agctaagagg aagcagaacc agtatgtcta
     3421 ccgcgtcctg tgcctagagt taggggaaca agttctcact ttacggattg ggaatcaccc
     3481 gggagtccta aaccctagtc cctctgtgga aaaggtgcag gtgcgcttca tctgtgccca
     3541 tcctgccagt atgttggtga caccgatgta caaggtgcca gctggcaccc agccatgtcc
     3601 tctgccacag tacaacaagc aactgattcc tgtgtccagt gtgagggaca cggtcctgga
     3661 actggcagta tttgatcagc acgggaggaa gtttgataat ttcagctcat tgatgctaga
     3721 atggaaatct tccaacgaga cgctagcccg ttttgaaagt cctaagtcag tggagatggt
     3781 agccagagac gatggcagtg ggcagacccg gctgcacggc catcagatcc ttgaggtgca
     3841 tcagataaag gggactgtgc tcattggagt caattttgct ggttattcag ggaagagaag
     3901 cccaaaaggg atttccaact cgccaaggtc cgcgggggta gaactactct tggtggaaga
     3961 tgtcacagtc cagcctgaga acgccaccat ctacaaccat cctgatgtga aggaagtatt
     4021 taaccttgtg gaaggatctg gctactttct ggtcaacagc agtgagcaag acatcgtcac
     4081 caccacttac atggaatcag aaggctcggt ccagttagtt ccagcacatc ctggatttct
     4141 aaccctgaaa gtgtatgacc tgtgcctggc ctacttgggt ccagcaatgg cccaggtcag
     4201 ggtgtcagac atacaggagg tagagctgga tctgatcgat aaggtggaga tcggtaaaac
     4261 cgtgttagtg gttgtgaggg ttcttggctc ttctaaacac cctttccgga acaagtactt
     4321 cagaaacatg gatgtcaggc tgcagctggc atctgccatt gtcaccctgc gattaacgga
     4381 agaccaggat gaatactctg aaaactacat gctccgtgct gtcactgttg gacaaaccac
     4441 acttgtggcc attgccacag atagaatggg gaggaaattc acatcagcgc ctcggcacat
     4501 cgaggtcttt cctccattta gactcgttcc tgagaaaatg accctgatta tcactaacat
     4561 gatgcagata atgtctgaag gtggccctca gccccagtcc accattcact tctctatcag
     4621 caatcagact gtagctgctg ttaacaggag agggcaagtt acagccaaag tggtgggcac
     4681 ggctgttgta cacggcacca tccagacagt gaatgaagac actggcaaag tcattgtgtt
     4741 ttcccaggat gaagtccaaa ttgaagttgt ccagctccag gctgttagga tccttgcggc
     4801 tgcgacccga ctcgtcacag ccacggagat gccagtttac gtcatgggag tgactagtac
     4861 ccagactcct ttctccttca gcaatgccag ccccatgctc acattccact ggtccatgag
     4921 caaaagagat gtgctggacc tggtacccag gcattcagag gtatttctac aacttccggc
     4981 tgagaacaac tttgccatgg ttgttcacac aaaagccgct ggcaggacca cgatcaaggt
     5041 cacggtccgc agtaagaaca gctccttcgg tcagtttgag aggaatgtgc tcgagctgtc
     5101 cgatgagatc cagatcctgg tatttgaaaa actccaactt ttctatgcag actgccaacg
     5161 tgagcagatt ctgatgccta tgaattctca gctcaagcta cacaccaaca gagaaggcgc
     5221 agcctctgtg agttcccgtg ttctcaagtg tttccctaac tcctccgtca ttgaagaaga
     5281 tggtgaagga ctcctgagat ctggatccat tgcgggtact gcagtattgg aagtcacttc
     5341 tatagaacct tttggagtca atcaaacaac tgtaactgga gtccaggcga caccagtgac
     5401 ttaccttcgg ttgagcagct accccaagct atacacagca caaggaagga ccctgtcagc
     5461 ctttcctctg ggcatgtctc tcacctttat tgttgagttt tataataaca ttggagaaaa
     5521 attccacacc cacaatactc ggctttatat ggctctgaac agagacgact tgctgcttat
     5581 tggaccagga aacaaaaact atacatatat ggcccaggct gtgaataaag gggtgacagt
     5641 tgtgggtctg tgggaccaaa gacaccccgg catggcagat tacatccctg tggctgtaga
     5701 gcatgccatt gagccagaca ccaagcttat ctctgttggc gatgtcatct gcttcagcac
     5761 tcagctcgtc agtcagcacg gtgagcctgg ggtgtggatg atttccacca acaacatcat
     5821 acagacagac actgtcactg gagtaggagt ggctcggagc ccaggaactg caacaatttt
     5881 tcatgacatc cctggagttg tgaaaacgtt ccgagaggta gtagtcaatg catcatcaag
     5941 attgacactc agctatgacc tgaaaactta cctcaccaat acccccaatg caactgtatt
     6001 caaactcttc atcagcacag gcagaagtgt caacctcaaa ggatcctgta ccccaagtca
     6061 ggctttggct gttgaaaaag ttcttcttcc tgagaccctc atgctatgcc atgtgcagtt
     6121 cagcaatact ttactagaca ttccagcaag taaagtcttt cacatttact cagaattcag
     6181 cgtggagaaa ggggtctatg tctgcctaat caaggttcga caggagtcag aggagctgcg
     6241 ccaggtcctg agtgtggcgg acacctcggt ctatgggtgg gcaactctgc tcagtgaacg
     6301 tggcaagaat ggcatgcaaa gaatcctcat tcctttcatc cctggctttt acatgaacca
     6361 gtccgagttt gttcttggcc acaaagacac cggggagcta agaatcctgg gagtggagag
     6421 agttcttgag agcctagagg tcttccacag ctccccattt ctaacagtct ccggccataa
     6481 gcattctacc ctcacaacaa gcgtaactct ctacctgata cgcatagtca acttcactgc
     6541 cttccagcag atgtcatcac ctgctttcat taatgtttcc tgtgcactga ccaatcaaca
     6601 tgaggctgtg gtagtcagag caaaagatgt atctggtgca gatcactgtg aagagtcagg
     6661 tgtcttcaag aatttcgttg gttcttacca gatcctgctg tttacactct ttgctgtgtt
     6721 ggcatccact gctttcatct tcctagcata caatgccttc ctgaacaagg tacagactat
     6781 tccagttgtt tatgtgccaa caataggacc gactcagcca ggtaaggact gcccgccctc
     6841 cttcccagtt cacgtctgtc tgtctcactc acctgccttc actattttgc ttttttttct
     6901 aggttcctat acagccacct gttctccccc tcacttcctg agctcacagc caccactagt
     6961 gcagagtcgg ctacaacact ggctgtggag tataaaacac taacctagac aggtcccttc
     7021 aactgtccta atcctgcaga agtttagtag ctaactctac aaactaaacc tccaaaacaa
     7081 gtttgtagaa cctataaata aaggctcatc agtggttaag tca
//
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